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13_1_40cm_scaffold_484

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_484_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1..1260
DNA (1260bp) protein (420aa)
cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
ctaD; cytochrome c oxidase subunit 1 (EC:1.9.3.1)
Cytochrome c oxidase, subunit I id=4464470 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_484_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1260..1559
DNA (300bp) protein (100aa)
Putative uncharacterized protein id=4464469 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_484_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1556..2302
DNA (747bp) protein (249aa)
Putative CtaG protein id=4464468 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ctaG; putative CtaG protein Tax=GWA2_Rokubacteria_73_35_curated
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
13_1_40cm_scaffold_484_4
unknown

Not on your lists

2418..2624
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_scaffold_484_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2703..4013
DNA (1311bp) protein (437aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase id=3102365 bin=GWC2_Methylomirabilis_70_16 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_484_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4018..4953
DNA (936bp) protein (312aa)
NAD-dependent epimerase/dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UDP-glucuronate decarboxylase (EC:4.1.1.35)
NAD-dependent epimerase/dehydratase id=2287859 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_484_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4950..5882
DNA (933bp) protein (311aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=GWA2_Rokubacteria_73_35_curated
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
NAD-dependent epimerase/dehydratase id=2287861 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_484_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5887..6057
DNA (171bp) protein (57aa)
Uncharacterized protein id=3972891 bin=GWC2_Methylomirabilis_70_24 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein; K09791 hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_484_9
unknown

Not on your lists

comp(5988..6431)
DNA (444bp) protein (148aa)

This feature has no annotations

13_1_40cm_scaffold_484_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6617..7048
DNA (432bp) protein (144aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nucleotidyl transferase id=3102370 bin=GWC2_Methylomirabilis_70_16 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nucleotidyl transferase
13_1_40cm_scaffold_484_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7089..8879
DNA (1791bp) protein (597aa)
GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Elongation factor 4 id=3972895 bin=GWC2_Methylomirabilis_70_24 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
GTP-binding protein LepA
13_1_40cm_scaffold_484_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8882..9601
DNA (720bp) protein (240aa)
lepB; signal peptidase I; K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
signal peptidase I (EC:3.4.21.89)
Signal peptidase I id=4648601 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_484_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9912..10946
DNA (1035bp) protein (345aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxygen-independent coproporphyrinogen III oxidase id=2287869 bin=GWA2_Methylomirabilis_73_35 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
coproporphyrinogen III oxidase
13_1_40cm_scaffold_484_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11008..12024
DNA (1017bp) protein (339aa)
heat-inducible transcriptional repressor; K03705 heat-inducible transcriptional repressor Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat-inducible transcription repressor HrcA id=2287870 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hrcA; heat-inducible transcription repressor HrcA
13_1_40cm_scaffold_484_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12021..12539
DNA (519bp) protein (173aa)
Protein GrpE id=2287871 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GrpE protein HSP-70 cofactor; K03687 molecular chaperone GrpE Tax=GWA2_Rokubacteria_73_35_curated
molecular chaperone GrpE
13_1_40cm_scaffold_484_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12542..13633
DNA (1092bp) protein (364aa)
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Chaperone protein DnaJ id=2287872 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
13_1_40cm_scaffold_484_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13633..14514
DNA (882bp) protein (294aa)
50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal protein L11 methyltransferase id=2287873 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L11 methyltransferase
13_1_40cm_scaffold_484_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

14592..15269
DNA (678bp) protein (226aa)
16S ribosomal RNA methyltransferase RsmE; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribosomal RNA small subunit methyltransferase E id=2287874 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA methyltransferase, RsmE family
13_1_40cm_scaffold_484_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

15262..15687
DNA (426bp) protein (142aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14625167 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_484_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15842..16741
DNA (900bp) protein (300aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=2287875 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium HF0770_27F21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_484_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16841..17401
DNA (561bp) protein (187aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2287876 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_484_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17427..19655
DNA (2229bp) protein (743aa)
nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] id=14625170 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sensor histidine kinase, HAMP and PAS domain-containing
13_1_40cm_scaffold_484_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20057..20974
DNA (918bp) protein (306aa)
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-54-dependent transcriptional response regulator
13_1_40cm_scaffold_484_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

20971..21327
DNA (357bp) protein (119aa)
Histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase id=3222448 bin=GWC2_Methylomirabilis_70_16 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_484_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21336..22829
DNA (1494bp) protein (498aa)
protein FdrA; K02381 FdrA protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase subunit id=2085289 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FdrA family protein
13_1_40cm_scaffold_484_26
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22895..23716)
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G738_GEOUR
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABQ27606.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter
13_1_40cm_scaffold_484_27
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23850..24848)
DNA (999bp) protein (333aa)
Putative ATP-dependent DNA ligase {ECO:0000313|EMBL:CCD85799.1}; EC=6.5.1.1 {ECO:0000313|EMBL:CCD85799.1};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizo
ligC; ATP-dependent DNA ligase (EC:6.5.1.1)
Putative ATP-dependent DNA ligase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RV22_9BRAD
13_1_40cm_scaffold_484_28
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(25027..26025)
DNA (999bp) protein (333aa)
hypothetical protein; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WD4_SOLUE
hypothetical protein
13_1_40cm_scaffold_484_29
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(26025..26597)
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAH3_ANADF
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_scaffold_484_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26737..28107
DNA (1371bp) protein (457aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2085282 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying items 1-30 of 46 in total

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