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13_1_40cm_scaffold_545

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_545_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1..339
DNA (339bp) protein (113aa)
TRAP transporter, solute receptor (TAXI family protein); K07080 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
TRAP transporter, solute receptor (TAXI family protein) id=3080368 bin=GWC2_Methylomirabilis_70_24 species=Nitratireductor indicus genus=Nitratireductor taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
TRAP transporter solute receptor TAXI family protein
13_1_40cm_scaffold_545_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

741..1151
DNA (411bp) protein (137aa)
Fimbrial protein pilin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Fimbrial protein pilin id=4953732 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fimbrial protein pilin
13_1_40cm_scaffold_545_3
unknown

Not on your lists

comp(1304..1489)
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_40cm_scaffold_545_4
unknown

Not on your lists

2137..2370
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_40cm_scaffold_545_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2383..4263
DNA (1881bp) protein (627aa)
TRAP transporter 4TM/12TM fusion protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
TRAP transporter, 4TM/12TM fusion protein id=3970258 bin=GWC2_Methylomirabilis_70_16 species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TRAP transporter 4TM/12TM fusion protein
13_1_40cm_scaffold_545_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4857..5243)
DNA (387bp) protein (129aa)
mutT; mutator protein MutT (EC:3.6.1.-); K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Mutator MutT protein id=4996876 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative mutator mutT protein
13_1_40cm_scaffold_545_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5213..5791)
DNA (579bp) protein (193aa)
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-); K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] id=14627033 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
mutY; A/G-specific adenine glycosylase (EC:3.2.2.-)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_545_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5917..6951
DNA (1035bp) protein (345aa)
glycine cleavage system t protein (EC:2.1.2.10); K06980 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
glycine cleavage system t protein (EC:2.1.2.10); K06980 id=14627031 bin=bin7_NC10_sister species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
gcvT1; glycine cleavage system T protein
13_1_40cm_scaffold_545_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7971..8867
DNA (897bp) protein (299aa)
hypothetical protein; K06888 Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=4996873 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_545_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8854..9519)
DNA (666bp) protein (222aa)
queC; Queuosine biosynthesis protein queC (EC:3.5.-.-) Tax=GWC2_Rokubacteria_70_16_curated
7-cyano-7-deazaguanine synthase id=4493697 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
exsB protein
13_1_40cm_scaffold_545_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9622..9954
DNA (333bp) protein (111aa)
Endoribonuclease L-PSP id=4170659 bin=GWA2_Methylomirabilis_73_35 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
endoribonuclease L-PSP Tax=GWA2_Rokubacteria_73_35_curated
translation initiation inhibitor
13_1_40cm_scaffold_545_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10133..10339
DNA (207bp) protein (69aa)
thiamine biosynthesis protein ThiS Tax=GWA2_Rokubacteria_73_35_curated
thiamine biosynthesis protein ThiS; K03154 sulfur carrier protein id=14627029 bin=bin7_NC10_sister species=Neptuniibacter caesariensis genus=Neptuniibacter taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_545_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10353..11135
DNA (783bp) protein (261aa)
thiG; thiazole synthase; K03149 thiamine biosynthesis ThiG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiazole synthase id=4800301 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thiG; thiamine biosynthesis protein ThiG
13_1_40cm_scaffold_545_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11120..11743
DNA (624bp) protein (208aa)
thiamine monophosphate synthase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine-phosphate synthase id=5006705 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiamine-phosphate synthase
13_1_40cm_scaffold_545_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11844..12899
DNA (1056bp) protein (352aa)
glycine oxidase; K03153 glycine oxidase [EC:1.4.3.19] Tax=GWA2_Rokubacteria_70_23_curated
Putative glycine oxidase id=4584627 bin=GWF2_Methylomirabilis_70_14 species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine oxidase
13_1_40cm_scaffold_545_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12896..14221
DNA (1326bp) protein (442aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidohydrolase id=4800307 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase
13_1_40cm_scaffold_545_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14226..14957
DNA (732bp) protein (244aa)
ABC transporter periplasmic ligand binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Periplasmic binding protein id=5006709 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
substrate-binding protein
13_1_40cm_scaffold_545_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15042..16487
DNA (1446bp) protein (482aa)
tldD; peptidase TldD Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative peptidase TldD id=4800311 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tldD; peptidase TldD
13_1_40cm_scaffold_545_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16484..17830
DNA (1347bp) protein (449aa)
pmbA; protease pmbA; K03592 PmbA protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptidase U62 id=5006712 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pmbA; protease pmbA
13_1_40cm_scaffold_545_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17843..18628
DNA (786bp) protein (262aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Deoxyribonuclease id=3951906 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
deoxyribonuclease
13_1_40cm_scaffold_545_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18716..19438
DNA (723bp) protein (241aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K06889 id=14627019 bin=bin7_NC10_sister species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_545_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19435..20580
DNA (1146bp) protein (382aa)
peptidase T-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M20B, peptidase T id=1894689 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
aminotripeptidase PepT-like protease
13_1_40cm_scaffold_545_23
unknown

Not on your lists

comp(20773..21252)
DNA (480bp) protein (160aa)

This feature has no annotations

13_1_40cm_scaffold_545_24
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

21795..22709
DNA (915bp) protein (305aa)
Multidrug resistance efflux pump Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
secretion protein HlyD family protein id=14627015 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
multidrug resistance efflux pump
13_1_40cm_scaffold_545_25
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22849..24387
DNA (1539bp) protein (513aa)
Histidine kinase {ECO:0000313|EMBL:ABS27974.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABS27974.1};; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaerom
Histidine kinase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGX8_ANADF
histidine kinase
13_1_40cm_scaffold_545_26
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

24384..26735
DNA (2352bp) protein (784aa)
Histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Histidine kinase (EC:2.7.13.3) id=14626869 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-sensor hybrid histidine kinase
13_1_40cm_scaffold_545_27
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(26777..27664)
DNA (888bp) protein (296aa)
Undecaprenyl-diphosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000255|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000255|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphat
Undecaprenyl-diphosphatase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=UPPP_KORVE
UDP-diphosphatase
13_1_40cm_scaffold_545_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27669..28493)
DNA (825bp) protein (275aa)
short-chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=3951909 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase
13_1_40cm_scaffold_545_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

28524..29252
DNA (729bp) protein (243aa)
Molybdopterin binding domain protein id=2419455 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin binding domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
molybdopterin binding domain-containing protein
13_1_40cm_scaffold_545_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

29259..30968
DNA (1710bp) protein (570aa)
Glycosyl transferase family 39 id=2419453 bin=GWA2_Methylomirabilis_73_35 species=Terriglobus saanensis genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase family protein Tax=GWA2_Rokubacteria_73_35_curated
4-amino-4-deoxy-L-arabinose transferase
Displaying items 1-30 of 62 in total

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