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13_1_40cm_scaffold_560

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_560_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..3457
DNA (3456bp) protein (1152aa)
indolepyruvate ferredoxin oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] Tax=GWA2_Rokubacteria_73_35_curated
2-oxoacid ferredoxin oxidoreductase (EC:1.2.7.8)
Indolepyruvate ferredoxin oxidoreductase id=3610279 bin=GWC2_Methylomirabilis_70_24 species=Streptosporangium roseum genus=Streptosporangium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_560_2
Legionella massiliensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3487..3921)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI0003705118
Scytalone dehydratase {ECO:0000313|EMBL:CDZ77372.1}; TaxID=1034943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.;" source="Legionella massiliensis.
13_1_40cm_scaffold_560_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3938..4375)
DNA (438bp) protein (146aa)
Peptide chain release factor id=3665312 bin=GWC2_Methylomirabilis_70_16 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_560_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4393..6117
DNA (1725bp) protein (575aa)
adenine deaminase; K01486 adenine deaminase [EC:3.5.4.2] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
adenine deaminase (EC:3.5.4.2)
Adenine deaminase id=3112746 bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_560_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6119..7063
DNA (945bp) protein (315aa)
esterase, PHB depolymerase family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Esterase, PHB depolymerase family id=3986302 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium populi genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
esterase, PHB depolymerase family
13_1_40cm_scaffold_560_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7069..8340
DNA (1272bp) protein (424aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAY5_GEMAT
hypothetical membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical membrane protein
13_1_40cm_scaffold_560_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8402..10009
DNA (1608bp) protein (536aa)
ABC transporter peptide-binding protein id=3884414 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter peptide-binding protein
13_1_40cm_scaffold_560_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10129..11028
DNA (900bp) protein (300aa)
Peptide ABC transporter permease protein id=4775216 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
peptide ABC transporter permease
13_1_40cm_scaffold_560_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11502..12419
DNA (918bp) protein (306aa)
Peptide ABC transporter permease protein id=4775215 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ABC transporter permease
13_1_40cm_scaffold_560_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12422..13831
DNA (1410bp) protein (470aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidase id=4599606 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
13_1_40cm_scaffold_560_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13842..15032)
DNA (1191bp) protein (397aa)
methyl-accepting chemotaxis protein Tax=GWA2_Rokubacteria_70_23_curated
Histidine kinase, HAMP region:chemotaxis sensory transducer id=2322387 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine kinase, HAMP region:chemotaxis sensory transducer
13_1_40cm_scaffold_560_12
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(15402..16130)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGH7_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK42364.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_scaffold_560_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16295..16828
DNA (534bp) protein (178aa)
hypothetical protein id=4775186 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_560_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16850..17620
DNA (771bp) protein (257aa)
peptidase M48, Ste24p Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M48, Ste24p id=3374266 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptidase M48, Ste24p
13_1_40cm_scaffold_560_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17817..18257
DNA (441bp) protein (147aa)
cell division protein MraZ; K03925 MraZ protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein MraZ id=3504172 bin=GWA2_Methylomirabilis_73_35 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MraZ protein
13_1_40cm_scaffold_560_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18296..19132
DNA (837bp) protein (279aa)
mraW; S-adenosyl-methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribosomal RNA small subunit methyltransferase H id=3504171 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mraW; S-adenosyl-methyltransferase MraW
13_1_40cm_scaffold_560_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19129..19536
DNA (408bp) protein (136aa)
hypothetical protein id=3504170 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_scaffold_560_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19533..21518
DNA (1986bp) protein (662aa)
ftsI; peptidoglycan transglycosylase and transpeptidase FtsI; K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=GWA2_Rokubacteria_73_35_curated
Peptidoglycan synthetase FtsI id=4599619 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ftsI; peptidoglycan transglycosylase and transpeptidase FtsI
13_1_40cm_scaffold_560_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21684..23177
DNA (1494bp) protein (498aa)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPLOWO2_02_FULL_Rok
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase id=3503986 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_560_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23180..24574
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=GWA2_Rokubacteria_73_35_curated
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase id=3503981 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_560_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24584..25666
DNA (1083bp) protein (361aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13); K01000 phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] Tax=GWA2_Rokubacteria_73_35_curated
Phospho-N-acetylmuramoyl-pentapeptide-transferase id=3503978 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase
13_1_40cm_scaffold_560_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25713..27092
DNA (1380bp) protein (460aa)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-N-acetylmuramoylalanine--D-glutamate ligase id=4599628 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
13_1_40cm_scaffold_560_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

27345..28418
DNA (1074bp) protein (358aa)
stage V sporulation protein E; K03588 cell division protein FtsW Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
stage V sporulation protein E; K03588 cell division protein FtsW id=14625505 bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
stage V sporulation protein E
13_1_40cm_scaffold_560_24
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28390..28974)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Cronobacter sakazakii 701 RepID=K8C702_CROSK
Uncharacterized protein {ECO:0000313|EMBL:EXI76168.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
13_1_40cm_scaffold_560_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

29114..29740
DNA (627bp) protein (209aa)
murC; UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UDP-N-acetylmuramate--L-alanine ligase id=3374064 bin=GWC2_Methylomirabilis_70_24 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
murC; UDP-N-acetylmuramate--L-alanine ligase
13_1_40cm_scaffold_560_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

29734..30612
DNA (879bp) protein (293aa)
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase id=4191405 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_560_27
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

30605..31474
DNA (870bp) protein (290aa)
polypeptide-transport-associated domain-containing protein; K03589 cell division protein FtsQ Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Polypeptide-transport-associated domain protein FtsQ-type id=4191404 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_560_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

31573..32718
DNA (1146bp) protein (382aa)
cell division protein FtsA; K03590 cell division protein FtsA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Cell division protein ftsA id=4191403 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsA; cell division protein FtsA
13_1_40cm_scaffold_560_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

32786..33946
DNA (1161bp) protein (387aa)
Cell division protein FtsZ id=4191402 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsZ; cell division protein ftsZ Tax=GWA2_Rokubacteria_73_35_curated
ftsZ; cell division protein ftsZ
13_1_40cm_scaffold_560_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

34192..34956
DNA (765bp) protein (255aa)
Putative uncharacterized protein id=4191401 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K05810 conserved hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
Displaying items 1-30 of 42 in total

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