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13_1_40cm_scaffold_616

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_616_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..772
DNA (771bp) protein (257aa)
(4Fe-4S) cluster-containing protein id=4115293 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron-sulfur cluster binding protein Tax=GWA2_Rokubacteria_73_35_curated
Iron-sulfur cluster binding protein
13_1_40cm_scaffold_616_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1496..1834
DNA (339bp) protein (113aa)
Putative uncharacterized protein id=4115295 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_616_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1839..2585
DNA (747bp) protein (249aa)
putative hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 id=4115296 bin=GWA2_Methylomirabilis_73_35 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
haloacid dehalogenase-like hydrolase protein
13_1_40cm_scaffold_616_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2637..3572
DNA (936bp) protein (312aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thioredoxin reductase id=4115297 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioredoxin reductase
13_1_40cm_scaffold_616_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4409..5218)
DNA (810bp) protein (270aa)
putative L-aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21] Tax=GWA2_Rokubacteria_73_35_curated
Probable L-aspartate dehydrogenase id=4115298 bin=GWA2_Methylomirabilis_73_35 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_616_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5271..6131
DNA (861bp) protein (287aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4115299 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_616_7
Cellulosimicrobium sp. MM, Cellulosimicrobium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5962..6978)
DNA (1017bp) protein (339aa)
Uncharacterized protein {ECO:0000313|EMBL:KFD44400.1}; TaxID=1523621 species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Cellulosimicrobium.;" source="Cellulosimicrobium sp. MM.;"
13_1_40cm_scaffold_616_8
unknown

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comp(6918..7172)
DNA (255bp) protein (85aa)

This feature has no annotations

13_1_40cm_scaffold_616_9
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7260..9272)
DNA (2013bp) protein (671aa)
Glr3452 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NFS2_GLOVI
hypothetical protein Tax=RBG_16_Deltaproteobacteria_71_12_curated
hypothetical protein
13_1_40cm_scaffold_616_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9307..9618
DNA (312bp) protein (104aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4115302 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_616_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9587..10750
DNA (1164bp) protein (388aa)
acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase id=4555257 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_616_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10767..12002
DNA (1236bp) protein (412aa)
dioxygenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4961237 bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dioxygenase
13_1_40cm_scaffold_616_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11999..12454
DNA (456bp) protein (152aa)
Putative uncharacterized protein id=4961238 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K09986 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_616_14

Not on your lists

12451..12786
DNA (336bp) protein (112aa)
Uncharacterized protein {ECO:0000313|EMBL:AHN97852.1}; TaxID=1447236 species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
13_1_40cm_scaffold_616_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12860..14539
DNA (1680bp) protein (560aa)
Benzoylformate decarboxylase (EC:4.1.1.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thiamine pyrophosphate TPP-binding domain-containing protein; K01576 benzoylformate decarboxylase [EC:4.1.1.7] id=14627836 bin=bin7_NC10_sister species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
Benzoylformate decarboxylase (EC:4.1.1.7)
13_1_40cm_scaffold_616_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14539..16155
DNA (1617bp) protein (539aa)
thiamine pyrophosphate-dependent protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine pyrophosphate protein TPP binding domain protein id=3441750 bin=GWC2_Methylomirabilis_70_24 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
thiamine pyrophosphate protein TPP binding domain-containing protein
13_1_40cm_scaffold_616_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

16327..16890
DNA (564bp) protein (188aa)
OmpA/MotB domain protein id=14626729 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
OmpA/MotB domain protein Tax=CSP1_6_Rokubacteria
peptidoglycan-associated lipoprotein
13_1_40cm_scaffold_616_18
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16946..18052)
DNA (1107bp) protein (369aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirill
Alanine dehydrogenase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ALQ1_AZOBR
ald; alanine dehydrogenase
13_1_40cm_scaffold_616_19
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18163..18969
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDA7_9BRAD
putative short-chain dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:EIG57763.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
13_1_40cm_scaffold_616_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19503..20510
DNA (1008bp) protein (336aa)
two component, sigma54 specific, Fis family transcriptional regulator id=14627680 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
two component, sigma54 specific, Fis family transcriptional regulator Tax=CSP1_6_Rokubacteria
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_scaffold_616_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(20624..20824)
DNA (201bp) protein (67aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Cold-shock DNA-binding domain protein id=2197703 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cold-shock DNA-binding domain-containing protein
13_1_40cm_scaffold_616_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21447..22145
DNA (699bp) protein (233aa)
fatty acid desaturase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fatty acid desaturase id=14625248 bin=bin7_NC10_sister species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
fatty acid desaturase
13_1_40cm_scaffold_616_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

22333..22548
DNA (216bp) protein (72aa)
id=4283019 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4283019 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_616_24
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

22554..22766
DNA (213bp) protein (71aa)
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 id=14626055 bin=bin7_NC10_sister species=Nitrospina sp. AB-629-B18 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
ribosomal protein s21
13_1_40cm_scaffold_616_25
unknown

Not on your lists

22774..23196
DNA (423bp) protein (141aa)

This feature has no annotations

13_1_40cm_scaffold_616_26
unknown

Not on your lists

23174..23389
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_scaffold_616_27
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(23395..23643)
DNA (249bp) protein (83aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=4646434 bin=GWA2_Methylomirabilis_73_35 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_616_28
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23731..23940)
DNA (210bp) protein (70aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW96974.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
13_1_40cm_scaffold_616_29
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(23970..24485)
DNA (516bp) protein (172aa)
resA; thiol-disulfide oxidoreductase resA id=14626589 bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
resA; thiol-disulfide oxidoreductase resA Tax=CSP1_6_Rokubacteria
putative thiol-disulfide oxidoreductase
13_1_40cm_scaffold_616_30
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24619..25590
DNA (972bp) protein (324aa)
NADPH:quinone reductase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MTR1_CORCM
qor2; NADPH:quinone reductase
NADPH:quinone reductase {ECO:0000313|EMBL:AFE10064.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Cor
Displaying items 1-30 of 40 in total

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