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13_1_40cm_scaffold_73

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Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_73_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..309
DNA (309bp) protein (103aa)
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH dehydrogenase I subunit E id=3990310 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
NADH-quinone oxidoreductase subunit E
13_1_40cm_scaffold_73_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

306..1508
DNA (1203bp) protein (401aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH dehydrogenase I subunit F id=3990315 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
NADH dehydrogenase I subunit F
13_1_40cm_scaffold_73_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1516..3087
DNA (1572bp) protein (524aa)
Molybdopterin oxidoreductase Fe4S4 region Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdopterin oxidoreductase Fe4S4 region id=14627535 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
Molybdopterin oxidoreductase Fe4S4 region
13_1_40cm_scaffold_73_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3084..4172
DNA (1089bp) protein (363aa)
nuoH_[H]; NADH-ubiquinone oxidoreductase chain H (EC:1.6.5.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nuoH; NADH-quinone oxidoreductase chain H (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] id=14627536 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
nuoH; NADH-quinone oxidoreductase chain H (EC:1.6.99.5)
13_1_40cm_scaffold_73_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4169..4708
DNA (540bp) protein (180aa)
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] id=14627537 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
13_1_40cm_scaffold_73_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4705..5292
DNA (588bp) protein (196aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] id=14627462 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
13_1_40cm_scaffold_73_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5289..5591
DNA (303bp) protein (101aa)
NADH-ubiquinone oxidoreductase subunit 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase subunit K id=4688381 bin=GWC2_Methylomirabilis_70_24 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
NADH-ubiquinone oxidoreductase subunit 4L
13_1_40cm_scaffold_73_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6197..6547
DNA (351bp) protein (117aa)
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) id=14627460 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1) Tax=CSP1_6_Rokubacteria
pdhA; Pyruvate dehydrogenase E1 component subunit alpha (EC:1.2.4.1)
13_1_40cm_scaffold_73_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6551..7540
DNA (990bp) protein (330aa)
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1) id=14627459 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1) Tax=CSP1_6_Rokubacteria
pdhB; Pyruvate dehydrogenase E1 component subunit beta (EC:1.2.4.1)
13_1_40cm_scaffold_73_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7544..8926
DNA (1383bp) protein (461aa)
pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) (EC:2.3.1.12) Tax=
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) id=2937410 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
13_1_40cm_scaffold_73_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

9163..10545
DNA (1383bp) protein (461aa)
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4) id=14627457 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lpD; dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (EC:1.8.1.4)
13_1_40cm_scaffold_73_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10629..11786
DNA (1158bp) protein (386aa)
acyl-CoA dehydrogenase domain-containing protein; K00257 [EC:1.3.99.-] Tax=GWA2_Rokubacteria_73_35_curated
Acyl-CoA dehydrogenase-like protein id=4092226 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_scaffold_73_13
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

11845..12738
DNA (894bp) protein (298aa)
luciferase-like monooxygenase Tax=GWA2_Elusimicrobia_69_24_curated
Putative uncharacterized protein id=3904351 bin=GWA2_Elusimicrobia_69_24 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
luciferase-like monooxygenase
13_1_40cm_scaffold_73_14
RIFOXYB2_FULL_Elusimicrobia_50_12_curated, Elusimicrobia, Bacteria

Not on your lists

comp(12758..14608)
DNA (1851bp) protein (617aa)
Tetratricopeptide TPR_1 repeat-containing protein Tax=RIFOXYB2_FULL_Elusimicrobia_50_12_curated
Transmembrane and TPR repeat-containing protein 3 id=3691543 bin=GWF2_Bacteroidetes_33_16 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
Transmembrane and TPR repeat-containing protein 3
13_1_40cm_scaffold_73_15
RBG_16_Desulfobacca_60_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14665..15255)
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LMW5_SYNFM
hypothetical protein Tax=RBG_16_Desulfobacca_60_12_curated
hypothetical protein
13_1_40cm_scaffold_73_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15248..15562)
DNA (315bp) protein (105aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=14627456 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_73_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15559..15966)
DNA (408bp) protein (136aa)
hypothetical protein id=4092232 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_73_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16001..17551
DNA (1551bp) protein (517aa)
propionyl-CoA carboxylase beta chain (EC:6.4.1.3) Tax=GWA2_Rokubacteria_73_35_curated
Putative propionyl-CoA carboxylase beta chain id=4092233 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
carboxyl transferase
13_1_40cm_scaffold_73_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17697..19271
DNA (1575bp) protein (525aa)
methylmalonyl-CoA mutase N-terminal domain-containing protein; K01848 methylmalonyl-CoA mutase, N-terminal domain [EC:5.4.99.2] Tax=GWA2_Rokubacteria_73_35_curated
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, N-terminal domain id=4092234 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_73_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19271..20077
DNA (807bp) protein (269aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=14627452 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_73_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20110..20826
DNA (717bp) protein (239aa)
Putative uncharacterized protein id=4092236 bin=GWA2_Methylomirabilis_73_35 species=Calditerrivibrio nitroreducens genus=Calditerrivibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_73_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20838..21836
DNA (999bp) protein (333aa)
Polyprenyl synthetase id=4092237 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polyprenyl synthetase Tax=GWA2_Rokubacteria_73_35_curated
octaprenyl diphosphate synthase
13_1_40cm_scaffold_73_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22008..22826
DNA (819bp) protein (273aa)
hypothetical protein; K09134 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4092238 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_73_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23115..23801
DNA (687bp) protein (229aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide TPR_4 id=4092321 bin=GWA2_Methylomirabilis_73_35 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_73_25
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

23951..25771
DNA (1821bp) protein (607aa)
id=4897956 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=4897956 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_73_26
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

25845..27728
DNA (1884bp) protein (628aa)
Uncharacterized protein id=2937128 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_73_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


27871..29088
DNA (1218bp) protein (406aa)
Histidine--tRNA ligase {ECO:0000313|EMBL:EDY31758.1}; EC=6.1.1.21 {ECO:0000313|EMBL:EDY31758.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;
Histidine-tRNA ligase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CBA3_9FIRM
HisS; histidyl-tRNA synthetase
13_1_40cm_scaffold_73_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


29085..30875
DNA (1791bp) protein (597aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12); K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=GWA2_Rokubacteria_73_35_curated
aspS; Aspartyl-tRNA synthetase / asparaginyl-tRNA synthetase (Aspartate-/asparagine-tRNA ligase) (AspRS) (EC:6.1.1.22 6.1.1.12)
Aspartate--tRNA ligase id=5009801 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_73_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

30880..31872
DNA (993bp) protein (331aa)
phoL; phoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PhoH family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins id=14626902 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
phoL; phoH-like protein
13_1_40cm_scaffold_73_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

31999..32325
DNA (327bp) protein (109aa)
ybeY; hypothetical protein; K07042 probable rRNA maturation factor Tax=GWA2_Rokubacteria_73_35_curated
Probable rRNA maturation factor id=5009799 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying items 1-30 of 36 in total

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