name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
13_1_40cm_scaffold_957_trna_1
unknown
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Not on your lists |
46..129
|
transferRNA
|
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13_1_40cm_scaffold_957_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(141..1127)
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oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase domain protein id=2319273 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase-like protein
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13_1_40cm_scaffold_957_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(1158..1754)
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ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-polyprenyl-4-hydroxybenzoate decarboxylase id=2319271 bin=GWA2_Methylomirabilis_73_35 species=Citrobacter freundii genus=Citrobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ubiX; 3-polyprenyl-4-hydroxybenzoate decarboxylase
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13_1_40cm_scaffold_957_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria
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Not on your lists |
comp(1751..2026)
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hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3212383 bin=GWC2_Methylomirabilis_70_16 species=Hydrogenobacter thermophilus genus=Hydrogenobacter taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
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13_1_40cm_scaffold_957_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(2026..2274)
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Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3299399 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
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13_1_40cm_scaffold_957_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
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Not on your lists |
comp(2339..3823)
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osmosensitive K+ channel signal transduction histidine kinase; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Integral membrane sensor signal transduction histidine kinase id=3299505 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sensor histidine kinase DivJ
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13_1_40cm_scaffold_957_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
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Not on your lists |
comp(3820..4611)
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hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3299507 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
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13_1_40cm_scaffold_957_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(4625..5323)
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PAS/PAC sensor-containing diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Diguanylate cyclase with PAS/PAC sensor id=3299509 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAMP domain/HD domain-containing protein
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13_1_40cm_scaffold_957_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(5308..5685)
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ompR; response regulator receiver Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component transcriptional regulator, winged helix family id=3299511 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
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13_1_40cm_scaffold_957_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
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Not on your lists |
comp(5817..6227)
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atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14) Tax=GWA2_Rokubacteria_73_35_curated
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase epsilon chain id=3299513 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
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13_1_40cm_scaffold_957_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
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Not on your lists |
comp(6228..7649)
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atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase subunit beta id=3212391 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
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13_1_40cm_scaffold_957_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(7646..8521)
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atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase gamma chain id=2324964 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
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13_1_40cm_scaffold_957_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
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Not on your lists |
comp(8528..10054)
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atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14) id=14625286 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14)
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13_1_40cm_scaffold_957_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
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Not on your lists |
comp(10115..10663)
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ATP synthase delta chain (EC:3.6.3.14) Tax=GWA2_Rokubacteria_73_35_curated
ATP synthase delta chain (EC:3.6.3.14)
ATP synthase subunit delta id=2324962 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
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13_1_40cm_scaffold_957_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria
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Not on your lists |
comp(10666..11280)
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Sodium-transporting two-sector ATPase (EC:3.6.3.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sodium-transporting two-sector ATPase (EC:3.6.3.15)
ATP synthase subunit b id=2324961 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
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13_1_40cm_scaffold_957_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(11375..12457)
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tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA-specific 2-thiouridylase MnmA id=2324960 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA-specific 2-thiouridylase mnmA
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13_1_40cm_scaffold_957_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria
|
Not on your lists |
comp(12461..13216)
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chromosome segregation DNA-binding protein; K03497 chromosome partitioning protein, ParB family id=14625290 bin=bin7_NC10_sister species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
chromosome segregation DNA-binding protein; K03497 chromosome partitioning protein, ParB family Tax=CSP1_6_Rokubacteria
parB-like partition protein
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13_1_40cm_scaffold_957_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(13209..14012)
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soj1; sporulation initiation inhibitor protein Soj Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chromosome partitioning ATPase Soj id=2324958 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
soj1; sporulation initiation inhibitor protein Soj
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13_1_40cm_scaffold_957_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(14101..14583)
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methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal RNA small subunit methyltransferase G id=2324957 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase GidB
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13_1_40cm_scaffold_957_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
|
Not on your lists |
comp(14723..16234)
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Membrane protein insertase YidC id=2324956 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxaA; inner membrane protein OxaA; K03217 preprotein translocase subunit YidC Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
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13_1_40cm_scaffold_957_20
unknown
|
Not on your lists |
16336..16935
|
This feature has no annotations |
|
13_1_40cm_scaffold_957_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(16994..17128)
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50S ribosomal protein L34 n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGX3_CHLTF
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L34
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13_1_40cm_scaffold_957_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
17432..18688
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dnaA; chromosomal replication initiator protein dnaA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaA; chromosomal replication initiator protein dnaA id=14625297 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaA; chromosomal replication initiator protein dnaA
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13_1_40cm_scaffold_957_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
18852..19946
|
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaN; DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=14625298 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
|
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13_1_40cm_scaffold_957_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
19983..20966
|
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA replication and repair protein RecF id=3212580 bin=GWC2_Methylomirabilis_70_16 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
recF; DNA replication and repair protein recf
|
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13_1_40cm_scaffold_957_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria
|
Not on your lists |
20963..23347
|
DNA gyrase B subunit (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] id=14625299 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA gyrase subunit B
|
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13_1_40cm_scaffold_957_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
|
Not on your lists |
23362..24699
|
gyrA; DNA gyrase subunit A (EC:5.99.1.3) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A id=2336356 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
|
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13_1_40cm_scaffold_957_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
24699..25754
|
gyrA; DNA gyrase subunit A (EC:5.99.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A id=4390130 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
|
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13_1_40cm_scaffold_957_28
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria
|
Not on your lists |
25764..27062
|
serS; Seryl-tRNA synthetase (EC:6.1.1.11) Tax=GWC2_Rokubacteria_70_16_curated
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase id=4391089 bin=GWC2_Methylomirabilis_70_16 species=Synergistes sp. 3_1_syn1 genus=Synergistes taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
|
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13_1_40cm_scaffold_957_trna_2
unknown
|
Not on your lists |
27452..27537
|
transferRNA
|