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13_1_40cm_scaffold_1030

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1030_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..387)
DNA (387bp) protein (129aa)
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] id=14626230 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
topA; TopA protein
13_1_40cm_scaffold_1030_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(374..1282)
DNA (909bp) protein (303aa)
transcriptional regulator, MarR family; K04096 DNA processing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA processing chain A (DprA/Smf) id=3806661 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dprA; DNA protection single-strand-binding protein DprA
13_1_40cm_scaffold_1030_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1341..2099)
DNA (759bp) protein (253aa)
TPR repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Tol-pal system protein YbgF id=3806662 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transmembrane protein
13_1_40cm_scaffold_1030_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2141..3385)
DNA (1245bp) protein (415aa)
molybdenum cofactor synthesis protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=GWA2_Rokubacteria_73_35_curated
Molybdenum cofactor synthesis domain protein id=3806663 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdenum cofactor synthesis protein
13_1_40cm_scaffold_1030_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3533..4645)
DNA (1113bp) protein (371aa)
MopC id=3806664 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mopC; protein MopC Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_1030_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4676..5098)
DNA (423bp) protein (141aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alcohol dehydrogenase large subunit id=3806665 bin=GWA2_Methylomirabilis_73_35 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1030_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5160..5672)
DNA (513bp) protein (171aa)
hypothetical membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3806666 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Protein of unknown function DUF3341
13_1_40cm_scaffold_1030_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5656..7002)
DNA (1347bp) protein (449aa)
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=14626218 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1030_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7040..9937)
DNA (2898bp) protein (966aa)
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
molybdopterin oxidoreductase Fe4S4 region; K00184 molybdopterin oxidoreductase, iron-sulfur binding subunit [EC:1.2.7.-] id=14626217 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
molybdopterin oxidoreductase Fe4S4 region
13_1_40cm_scaffold_1030_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10119..10805)
DNA (687bp) protein (229aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3942769 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome C
13_1_40cm_scaffold_1030_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10898..12175)
DNA (1278bp) protein (426aa)
glutamate-1-semialdehyde-2,1-aminomutase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=GWC2_Rokubacteria_70_16_curated
Glutamate-1-semialdehyde 2,1-aminomutase id=4140643 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glutamate-1-semialdehyde-2,1-aminomutase
13_1_40cm_scaffold_1030_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12175..12639)
DNA (465bp) protein (155aa)
Mov34/MPN/PAD-1 family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Mov34/MPN/PAD-1 family protein id=3942771 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative sulfurylase
13_1_40cm_scaffold_1030_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12636..12917)
DNA (282bp) protein (94aa)
hypothetical protein; K03636 molybdopterin synthase sulfur carrier subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative Molybdopterin biosynthesis protein moeB (Modular protein) id=3367016 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Molybdopterin biosynthesis protein moeB
13_1_40cm_scaffold_1030_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12937..13857)
DNA (921bp) protein (307aa)
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47)
Cysteine synthase id=3942773 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1030_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13871..14326)
DNA (456bp) protein (152aa)
Transcriptional regulator, Rrf2 family id=3942774 bin=GWA2_Methylomirabilis_73_35 species=Pseudoflavonifractor capillosus genus=Pseudoflavonifractor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
BadM/Rrf2 family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
BadM/Rrf2 family transcriptional regulator
13_1_40cm_scaffold_1030_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14323..15309)
DNA (987bp) protein (329aa)
hemB; Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (EC:4.2.1.24) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hemB; Delta-aminolevulinic acid dehydratase (porphobilinogen synthase) (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase id=3910775 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1030_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15310..16146)
DNA (837bp) protein (279aa)
uroporphyrin-III C-methyltransferase; K13542 uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] Tax=GWA2_Rokubacteria_73_35_curated
Uroporphyrin-III C-methyltransferase id=3449156 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uroporphyrinogen-III methylase and Uroporphyrinogen-III synthase
13_1_40cm_scaffold_1030_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16143..17063)
DNA (921bp) protein (307aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase id=3448984 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1030_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17060..18331)
DNA (1272bp) protein (424aa)
hemA; glutamyl-tRNA reductase; K02492 glutamyl-tRNA reductase [EC:1.2.1.70] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase id=3448982 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1030_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18331..18972)
DNA (642bp) protein (214aa)
cytochrome c biogenesis protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ResC/HemX-like cytochrome c biogenesis membrane protein id=3448980 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ResC/HemX-like cytochrome c biogenesis membrane protein
13_1_40cm_scaffold_1030_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(19199..20071)
DNA (873bp) protein (291aa)
Uncharacterized protein involved in formate dehydrogenase formation id=3227780 bin=GWC2_Methylomirabilis_70_24 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
formate dehydrogenase formation protein; K02380 FdhE protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_1030_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20143..20967)
DNA (825bp) protein (275aa)
Polysulfide reductase NrfD; K04015 protein NrfD id=14627925 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Polysulfide reductase NrfD; K04015 protein NrfD Tax=GWA2_Rokubacteria_73_35_curated
Polysulfide reductase NrfD
13_1_40cm_scaffold_1030_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20960..21748)
DNA (789bp) protein (263aa)
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4Fe-4S ferredoxin iron-sulfur binding domain protein id=4440924 bin=GWF2_Methylomirabilis_70_14 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
13_1_40cm_scaffold_1030_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(21751..22185)
DNA (435bp) protein (145aa)
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] id=14627927 bin=bin7_NC10_sister species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] Tax=CSP1_6_Rokubacteria
formate dehydrogenase subunit alpha (EC:1.2.1.2)
Displaying 24 items

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