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13_1_40cm_scaffold_11996

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_11996_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(2..1072)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q84CW3_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_1_40cm_scaffold_11996_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1089..1994)
DNA (906bp) protein (302aa)
Lytic transglycosylase, catalytic Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lytic transglycosylase, catalytic id=3773019 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lytic transglycosylase, catalytic
13_1_40cm_scaffold_11996_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2223..3356)
DNA (1134bp) protein (378aa)
Putative amidohydrolase 2 protein n=2 Tax=Ralstonia solanacearum RepID=B5SFS4_RALSL
putative hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative hydrolase
13_1_40cm_scaffold_11996_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3372..4370)
DNA (999bp) protein (333aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fatty oxidation complex, alpha subunit id=4279011 bin=GWA2_Methylomirabilis_73_35 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_scaffold_11996_5
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4790..5500)
DNA (711bp) protein (237aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JWK6_BURP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA50341.1}; TaxID=320372 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source
13_1_40cm_scaffold_11996_6
R_NC10_66_22, NC10, Bacteria

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6440..7267
DNA (828bp) protein (276aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative sugar uptake ABC transporter periplasmic solute-binding protein id=2228895 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_1_40cm_scaffold_11996_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7390..7854
DNA (465bp) protein (155aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family two component sigma-54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX id=14627944 bin=bin7_NC10_sister species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_11996_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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7992..8297
DNA (306bp) protein (102aa)
id=3864198 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=3864198 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_11996_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

8317..10152
DNA (1836bp) protein (612aa)
amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4646454 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. ORS 375 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_40cm_scaffold_11996_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10136..10855
DNA (720bp) protein (240aa)
Salicylaldehyde dehydrogenase (Modular protein) id=4646459 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter
13_1_40cm_scaffold_11996_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10884..11753
DNA (870bp) protein (290aa)
ABC-type transporter, integral membrane subunit id=4646461 bin=GWA2_Methylomirabilis_73_35 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter integral membrane subunit; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
branched-chain amino acid ABC transporter permease
13_1_40cm_scaffold_11996_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

11753..12328
DNA (576bp) protein (192aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Inner-membrane translocator id=4646463 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
Displaying 12 items

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