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13_1_40cm_scaffold_1236

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1236_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2..739
DNA (738bp) protein (246aa)
peptidase M16 domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative enzyme id=4153827 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium 98 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ymxG; hypothetical protein
13_1_40cm_scaffold_1236_2
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(648..1592)
DNA (945bp) protein (315aa)
Cyclase family protein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGD2_THEM7
Cyclase {ECO:0000313|EMBL:EWT06681.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
cyclase family protein
13_1_40cm_scaffold_1236_3
Candidatus Accumulibacter sp. SK-01, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1589..2251)
DNA (663bp) protein (221aa)
GntR family transcriptional regulator n=1 Tax=Thermus islandicus RepID=UPI0003B520FA
Putative HTH-type transcriptional regulator YdfH {ECO:0000313|EMBL:KFB67919.1}; TaxID=1457154 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Acc
GntR family transcriptional regulator
13_1_40cm_scaffold_1236_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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2549..3343
DNA (795bp) protein (265aa)
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QES4_9BRAD
short-chain dehydrogenase/reductase SDR Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_scaffold_1236_5
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3371..4645
DNA (1275bp) protein (425aa)
Extracellular ligand-binding receptor n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QIA8_DESB2
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
extracellular ligand-binding receptor
13_1_40cm_scaffold_1236_6
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4657..5292
DNA (636bp) protein (212aa)
Aminomethyltransferase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TRU8_9PROT
hypothetical protein; K09967 hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
ycgI; hypothetical protein
13_1_40cm_scaffold_1236_7
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5300..6115
DNA (816bp) protein (272aa)
Inner-membrane translocator n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QIA7_DESB2
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
inner-membrane translocator
13_1_40cm_scaffold_1236_8
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6117..7046
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI0003632985
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
ABC transporter permease
13_1_40cm_scaffold_1236_9
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7043..7765
DNA (723bp) protein (241aa)
Monosaccharide-transporting ATPase n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FGK5_9EURY
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
ABC transporter ATP-binding protein
13_1_40cm_scaffold_1236_10
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7758..8480
DNA (723bp) protein (241aa)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RBG_13_Deltaproteobacteria_51_10_curated
ABC transporter ATP-binding protein id=1703882 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid ABC transporter ATP-binding protein
13_1_40cm_scaffold_1236_11
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8506..9477
DNA (972bp) protein (324aa)
ABC transporter substrate-binding protein n=1 Tax=Acidovorax radicis RepID=UPI0002375BF2
bug; extra-cytoplasmic solute receptor protein Tax=RBG_13_Deltaproteobacteria_47_9_curated
hypothetical protein
13_1_40cm_scaffold_1236_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9477..9926
DNA (450bp) protein (150aa)
hypothetical protein; K07794 putative tricarboxylic transport membrane protein id=14626405 bin=bin7_NC10_sister species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Tripartite tricarboxylate transporter TctB family
13_1_40cm_scaffold_1236_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9933..11447
DNA (1515bp) protein (505aa)
hypothetical protein; K07793 putative tricarboxylic transport membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K07793 putative tricarboxylic transport membrane protein id=14626406 bin=bin7_NC10_sister species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1236_14
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11463..12869
DNA (1407bp) protein (469aa)
UbiD family decarboxylase n=1 Tax=Spirochaeta bajacaliforniensis RepID=UPI00037380F6
UbiD family decarboxylase Tax=RBG_16_Deltaproteobacteria_48_10_curated
UbiD family decarboxylase
13_1_40cm_scaffold_1236_15
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

12874..13752
DNA (879bp) protein (293aa)
Molybdopterin dehydrogenase FAD-binding protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C783_SPHTD
molybdopterin dehydrogenase FAD-binding protein rbh
Molybdopterin dehydrogenase FAD-binding protein {ECO:0000313|EMBL:ACZ39729.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae
13_1_40cm_scaffold_1236_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13749..14234
DNA (486bp) protein (162aa)
(2Fe-2S)-binding protein {ECO:0000313|EMBL:ETW96851.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
(2Fe-2S)-binding protein id=24480318 bin=RBG_19FT_COMBO_GAL15_69_19 species=Nocardia sp. 348MFTsu5.1 genus=Nocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
aldehyde oxidase small subunit
13_1_40cm_scaffold_1236_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14238..15227
DNA (990bp) protein (330aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
13_1_40cm_scaffold_1236_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15227..15961
DNA (735bp) protein (245aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PX13_STANL
ABC transporter inner membrane protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
binding-protein-dependent transporter inner membrane component
13_1_40cm_scaffold_1236_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15949..16728
DNA (780bp) protein (260aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Streptomyces aurantiacus JA 4570 RepID=S3ZPR2_9ACTO
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
ABC transporter-like protein
13_1_40cm_scaffold_1236_20
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16728..17177
DNA (450bp) protein (150aa)
Putative transport system permease abc transporter protein n=1 Tax=Rhizobium sp. RepID=L0NBG1_RHISP
ABC transporter permease {ECO:0000313|EMBL:EWY42167.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella st
binding-protein-dependent transporters inner membrane component
13_1_40cm_scaffold_1236_21
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17129..17395
DNA (267bp) protein (89aa)
binding-protein-dependent transporter inner membrane component; K02050 NitT/TauT family transport system permease protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
binding-protein-dependent transporter inner membrane component; K02050 NitT/TauT family transport system permease protein id=24582430 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stackebrandtia nassauensis genus=Stackebrandtia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
binding-protein-dependent transporter inner membrane component
13_1_40cm_scaffold_1236_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17846..18835
DNA (990bp) protein (330aa)
Amidohydrolase 2 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A126_STAND
amidohydrolase 2 Tax=GWA2_Rokubacteria_73_35_curated
amidohydrolase 2
13_1_40cm_scaffold_1236_23
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18832..21147
DNA (2316bp) protein (772aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AUV4_RUBXD
13_1_40cm_scaffold_1236_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21147..23495
DNA (2349bp) protein (783aa)
carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) (EC:1.2.99.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Carbon monoxide dehydrogenase large chain (COdehydrogenase subunit L) (CO-DH L) id=3847107 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein
13_1_40cm_scaffold_1236_25
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23492..24004
DNA (513bp) protein (171aa)
ABC transporter n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P7P9_AZOS1
Putative aliphatic sulfonates-binding protein {ECO:0000313|EMBL:CEL29282.1}; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source=
ABC transporter
Displaying 25 items

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