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13_1_40cm_scaffold_2001_6

Organism: 13_1_40CM_Rokubacteria_68_15

partial RP 19 / 55 BSCG 18 / 51 ASCG 9 / 38 MC: 1
Location: 5472..6179

Top 3 Functional Annotations

Value Algorithm Source
ABC-type proline/glycine betaine transport system, ATPase component n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y6B9_THIV6 id=5224893 bin=16ft_combo_ws3_JS1 species=Thiocystis violascens genus=Thiocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade similarity UNIREF
DB: UNIREF100
  • Identity: 56.9
  • Coverage: 239.0
  • Bit_score: 253
  • Evalue 2.00e-64
ABC transporter-like protein; K05847 osmoprotectant transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 62.3
  • Coverage: 239.0
  • Bit_score: 284
  • Evalue 1.10e-73
ABC transporter ATP-binding protein similarity KEGG
DB: KEGG
  • Identity: 54.6
  • Coverage: 238.0
  • Bit_score: 242
  • Evalue 1.30e-61

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Taxonomy

RLO_Rokubacteria_71_22 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 708
ATGCTCGCCCTCCGCGACGTCACCAAGACGTTCGGCGCCCGCGTGGCGGTCGATCACGTTTCACTGACCGTCGAGCGCGGCAGCACGCGCGTCCTGCTCGGGTCGAGCGGCTCCGGCAAGTCCACCATCCTCCGGCTGATCCTCGGGCTGCTGCGTCCCGATGGCGGTCAGATCTCCGTGGACGGCGGCATGGGCTACGTCGTTCAGGAAGGCGCCCTCTATCCGCACCTCACCGCCCGCCAGAACGCGACGCTCCCCGCCCGCGCGGAGGAGTGGACGGCAGCGCGCATGGCGGCACGCCTCGACGCCCTCGCCAAGCTGGTCGGACTCGAGCCAGCGCTGCTCGATCTCTATCCCGGTGAGCTGAGCGGCGGCCAGCGCCAGCGGGTGGGCCTGGCGCGCGCGTTGATGCTCGACCCGCCGGTGCTGCTCCTCGACGAGCCGCTCGGCGCGCTCGATCCGATCTCGCGCGCGGAGCTGCAGACGCACCTGGTCGGCATCTTCCGCGAGTTGGGCAAGACGGTGCTGCTGGTCACGCACGACGTGCGCGAAGCGTTCCTGTTCGGGTCCACGATCACGCTGCTCAACAACGGTCGCGTCGTGCAGGAAGGCACGTTCGAGGACCTCGCGCGGCGGCCGGCCGAGCCTTACGTCGCCGAGTTCCTGCGCGCCCAGGCGCCGCCACCCAACATGACTGCGTACCTGTAG
PROTEIN sequence
Length: 236
MLALRDVTKTFGARVAVDHVSLTVERGSTRVLLGSSGSGKSTILRLILGLLRPDGGQISVDGGMGYVVQEGALYPHLTARQNATLPARAEEWTAARMAARLDALAKLVGLEPALLDLYPGELSGGQRQRVGLARALMLDPPVLLLDEPLGALDPISRAELQTHLVGIFRELGKTVLLVTHDVREAFLFGSTITLLNNGRVVQEGTFEDLARRPAEPYVAEFLRAQAPPPNMTAYL*