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13_1_40cm_scaffold_6111_2

Organism: 13_1_40CM_Rokubacteria_68_15

partial RP 19 / 55 BSCG 18 / 51 ASCG 9 / 38 MC: 1
Location: comp(1940..2452)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 83.3
  • Coverage: 168.0
  • Bit_score: 296
  • Evalue 2.00e-77
RNA polymerase sigma factor id=4801469 bin=GWC2_Methylomirabilis_70_16 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 similarity UNIREF
DB: UNIREF100
  • Identity: 73.9
  • Coverage: 165.0
  • Bit_score: 248
  • Evalue 3.50e-63
ECF subfamily RNA polymerase sigma-24 similarity KEGG
DB: KEGG
  • Identity: 44.5
  • Coverage: 173.0
  • Bit_score: 152
  • Evalue 9.60e-35

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Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 513
ATGGCCGACAGCGAGTTCCAGCGCCTGGCTCTCGCGCACCTGGACGCGCTCTACAACTTCGCGATGTATTTGACCCGGAACCCGGCCGAGGCCGATGATCTGGTCCAGGAAACCTACCTTCGGGCGTTCCGGTTCTCCCATCGTTTCCAGCCGGGAACTCACCTCCGGGCCTGGCTGTTTCAAATTTTGAGGAACACTTTTTTGACGTTCTACCGTCTTCGGGAGCGCGAGCTTCCGCTGGCGGAGGACGGCGTGCCCGACTGGGACGCCCCGATGTTCCACGAAGCCCCGGCCGAGGACCCGGGCGTGCTGGAGGCCCACACGGACCTCGAGCGCGCGATGCGGCGCCTCCCGGACGAGTTCCGGACGGTGCTCTTGCTCGCGGAAGTGGAAGGGTTACCACTCGAGGAAGTGGCCCAGATCATGGCCTGCCCGGTGGGCACCGTGAAGTCGAGGATCTTTCGTGCCAAGGAACGCCTGCGGGTGATCCTGCGCGACTACGAAAAAACATGA
PROTEIN sequence
Length: 171
MADSEFQRLALAHLDALYNFAMYLTRNPAEADDLVQETYLRAFRFSHRFQPGTHLRAWLFQILRNTFLTFYRLRERELPLAEDGVPDWDAPMFHEAPAEDPGVLEAHTDLERAMRRLPDEFRTVLLLAEVEGLPLEEVAQIMACPVGTVKSRIFRAKERLRVILRDYEKT*