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13_1_40cm_scaffold_39

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_39_1
unknown

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1..102
DNA (102bp) protein (34aa)

This feature has no annotations

13_1_40cm_scaffold_39_2
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

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comp(294..932)
DNA (639bp) protein (213aa)
RNA polymerase sigma-30 factor (Sigma(H)) n=1 Tax=mine drainage metagenome RepID=E6PJ70_9ZZZZ
ECF subfamily RNA polymerase sigma-70 subunit SigH; K03091 RNA polymerase sporulation-specific sigma factor Tax=RBG_16_Armatimonadetes_67_12_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_scaffold_39_3
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(1030..1824)
DNA (795bp) protein (265aa)
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] id=24419348 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
TrmH family RNA methyltransferase
13_1_40cm_scaffold_39_4
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(1802..3352)
DNA (1551bp) protein (517aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] id=14630658 bin=bin9_gal15 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] Tax=CSP1_3_Armatimonadetes
cysteinyl-tRNA synthetase (EC:6.1.1.16)
13_1_40cm_scaffold_39_5
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(3447..3908)
DNA (462bp) protein (154aa)
id=24419346 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
id=24419346 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
13_1_40cm_scaffold_39_6
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(3850..5025)
DNA (1176bp) protein (392aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] id=24419345 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; K12506 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
13_1_40cm_scaffold_39_7
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(5022..6095)
DNA (1074bp) protein (358aa)
PilT protein domain-containing protein id=24419344 bin=RBG_19FT_COMBO_GAL15_69_19 species=Sulfobacillus acidophilus genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
PilT protein domain-containing protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PilT protein domain-containing protein
13_1_40cm_scaffold_39_8
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

6347..6742
DNA (396bp) protein (132aa)
hypothetical protein id=24419343 bin=RBG_19FT_COMBO_GAL15_69_19 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
hypothetical protein
13_1_40cm_scaffold_39_9
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(6817..8163)
DNA (1347bp) protein (449aa)
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms id=24419342 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
DNA repair protein RadA
13_1_40cm_scaffold_39_10
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(8259..10718)
DNA (2460bp) protein (820aa)
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC id=24419341 bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
ATPase AAA
13_1_40cm_scaffold_39_11
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(11036..11515)
DNA (480bp) protein (160aa)
transcription elongation factor GreA; K03624 transcription elongation factor GreA id=24419340 bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
GreA/GreB family elongation factor; K03624 transcription elongation factor GreA Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
transcription elongation factor GreA
13_1_40cm_scaffold_39_12
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(11758..12891)
DNA (1134bp) protein (378aa)
saccharopine dehydrogenase id=24411066 bin=RBG_19FT_COMBO_GAL15_69_19 species=Sulfobacillus thermosulfidooxidans genus=Sulfobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
saccharopine dehydrogenase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
shikimate/quinate 5-dehydrogenase
13_1_40cm_scaffold_39_13
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(12888..13847)
DNA (960bp) protein (320aa)
hypothetical protein id=24411067 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
hypothetical protein
13_1_40cm_scaffold_39_14
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(13892..14689)
DNA (798bp) protein (266aa)
Baf family transcriptional acitvator (EC:2.7.1.33); K03525 type III pantothenate kinase [EC:2.7.1.33] id=24411068 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Baf family transcriptional acitvator (EC:2.7.1.33); K03525 type III pantothenate kinase [EC:2.7.1.33] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
Baf family transcriptional acitvator (EC:2.7.1.33)
13_1_40cm_scaffold_39_15
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(14696..15472)
DNA (777bp) protein (259aa)
hypothetical protein id=24411069 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
putative membrane protein
13_1_40cm_scaffold_39_16
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(15617..16570)
DNA (954bp) protein (318aa)
peptidase S58 DmpA id=24411070 bin=RBG_19FT_COMBO_GAL15_69_19 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
peptidase S58 DmpA Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
peptidase S58 DmpA
13_1_40cm_scaffold_39_17
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16573..17355)
DNA (783bp) protein (261aa)
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] id=24411071 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
transcriptional repressor, BirA-like
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978
13_1_40cm_scaffold_39_18
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(17480..18103)
DNA (624bp) protein (208aa)
deoxynucleoside kinase (EC:2.7.1.-) id=24411072 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
deoxynucleoside kinase (EC:2.7.1.-) Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
deoxynucleoside kinase
13_1_40cm_scaffold_39_19
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(18177..18851)
DNA (675bp) protein (225aa)
deoxynucleoside kinase id=24411073 bin=RBG_19FT_COMBO_GAL15_69_19 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
deoxynucleoside kinase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
deoxynucleoside kinase
13_1_40cm_scaffold_39_20
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(18848..19384)
DNA (537bp) protein (179aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] id=24411074 bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfotomaculum carboxydivorans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] Tax=RBG_19FT_COMBO_Armatimonadet
FolK; 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
13_1_40cm_scaffold_39_21
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(19391..19753)
DNA (363bp) protein (121aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25] id=24411075 bin=RBG_19FT_COMBO_GAL15_69_19 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
dihydroneopterin aldolase (EC:4.1.2.25)
dihydroneopterin aldolase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_39_22
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(19746..21002)
DNA (1257bp) protein (419aa)
imidazolonepropionase; K01468 imidazolonepropionase [EC:3.5.2.7] id=24411077 bin=RBG_19FT_COMBO_GAL15_69_19 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
imidazolonepropionase; K01468 imidazolonepropionase [EC:3.5.2.7] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
imidazolonepropionase
13_1_40cm_scaffold_39_23
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(21042..21938)
DNA (897bp) protein (299aa)
glutamate formiminotransferase; K00603 glutamate formiminotransferase [EC:2.1.2.5] id=24411078 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
glutamate formiminotransferase; K00603 glutamate formiminotransferase [EC:2.1.2.5] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
glutamate formiminotransferase (EC:2.1.2.5)
13_1_40cm_scaffold_39_24
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

22077..22649
DNA (573bp) protein (191aa)
kptA; putative RNA 2'-phosphotransferase (EC:2.7.1.-) id=24408079 bin=RBG_19FT_COMBO_GAL15_69_19 species=Streptomyces sp. SPB78 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
kptA; putative RNA 2'-phosphotransferase (EC:2.7.1.-) Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
phosphotransferase KptA/Tpt1
13_1_40cm_scaffold_39_25
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

22685..23440
DNA (756bp) protein (252aa)
type 11 methyltransferase Tax=CG_Arma_01
type 11 methyltransferase id=14632270 bin=bin9_gal15 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
type 11 methyltransferase
13_1_40cm_scaffold_39_26
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(23487..23972)
DNA (486bp) protein (162aa)
hypothetical protein Tax=RBG_16_Armatimonadetes_67_12_curated
Uncharacterized protein id=24404062 bin=RBG_19FT_COMBO_GAL15_69_19 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_scaffold_39_27
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(24046..24417)
DNA (372bp) protein (124aa)
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
hypothetical protein id=24471116 bin=RBG_19FT_COMBO_GAL15_69_19 species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_scaffold_39_28
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(24461..25150)
DNA (690bp) protein (230aa)
id=24471113 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24471113 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_39_29
R_RIF_OD1_13_60_25, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(25483..28710)
DNA (3228bp) protein (1076aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.6); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_13_60_25_curated
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-] id=14630631 bin=bin9_gal15 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
ftsH; cell division protein FtsH; ATP-dependent zinc-metallo protease (EC:3.4.24.-)
13_1_40cm_scaffold_39_30
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(28850..30235)
DNA (1386bp) protein (462aa)
cell cycle protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] id=24471108 bin=RBG_19FT_COMBO_GAL15_69_19 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
cell cycle protein; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
tRNA(Ile)-lysidine synthetase-like protein
Displaying items 1-30 of 41 in total

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