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13_1_40cm_scaffold_50

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_50_1
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(3..260)
DNA (258bp) protein (86aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] id=24415227 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
branched chain amino acid aminotransferase apoenzyme
13_1_40cm_scaffold_50_trna_1
unknown

Not on your lists

comp(460..531)
DNA (72bp)
transferRNA
13_1_40cm_scaffold_50_2
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(807..1514)
DNA (708bp) protein (236aa)
anther-specific proline-rich protein APG id=24418700 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
anther-specific proline-rich protein APG Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_50_3
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(1934..2815)
DNA (882bp) protein (294aa)
id=24415229 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Tax=CSP1_3_Armatimonadetes
13_1_40cm_scaffold_50_4
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(2835..3176)
DNA (342bp) protein (114aa)
iojap family protein; K09710 ribosome-associated protein id=24415230 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
iojap family protein; K09710 ribosome-associated protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
iojap family protein
13_1_40cm_scaffold_50_5
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(3173..3784)
DNA (612bp) protein (204aa)
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] id=24415231 bin=RBG_19FT_COMBO_GAL15_69_19 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18)
13_1_40cm_scaffold_50_6
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(3882..4994)
DNA (1113bp) protein (371aa)
GTP-binding protein Obg/CgtA; K03979 GTP-binding protein id=24415232 bin=RBG_19FT_COMBO_GAL15_69_19 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
GTP-binding protein Obg/CgtA; K03979 GTP-binding protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
Obg; GTPase
13_1_40cm_scaffold_50_7
MPJ_Desulfotomaculum_kuznetsovii_45_62_partial, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(5029..5289)
DNA (261bp) protein (87aa)
50S ribosomal protein L27 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4S2_SPHTD
50S ribosomal protein L27
50S ribosomal protein L27 Tax=MPJ_Desulfotomaculum_kuznetsovii_45_62_partial
13_1_40cm_scaffold_50_8
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists


comp(5322..5633)
DNA (312bp) protein (104aa)
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 id=24415234 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
50S ribosomal protein L21
13_1_40cm_scaffold_50_9
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(5697..7352)
DNA (1656bp) protein (552aa)
RNAse G; K08301 ribonuclease G [EC:3.1.26.-] id=24415235 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
RNAse G; K08301 ribonuclease G [EC:3.1.26.-] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
RNAse G (EC:3.1.4.-)
13_1_40cm_scaffold_50_10
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(7378..8472)
DNA (1095bp) protein (365aa)
cell elongation-specific peptidoglycan biosynthesis regulator RodA; K05837 rod shape determining protein RodA id=24415236 bin=RBG_19FT_COMBO_GAL15_69_19 species=Anaeromusa acidaminophila genus=Anaeromusa taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
cell elongation-specific peptidoglycan biosynthesis regulator RodA; K05837 rod shape determining protein RodA Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
cell elongation-specific peptidoglycan biosynthesis regulator RodA
13_1_40cm_scaffold_50_11
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(8469..10235)
DNA (1767bp) protein (589aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2 id=24415237 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2 Tax=CSP1_3_Armatimonadetes
mrdA; penicillin-binding protein 2
13_1_40cm_scaffold_50_12
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10253..10750)
DNA (498bp) protein (166aa)
Rod shape-determining protein MreD n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HP02_9FIRM
Rod shape-determining protein MreD {ECO:0000313|EMBL:EAX48110.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carbox
rod shape-determining protein MreD
13_1_40cm_scaffold_50_13
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(10832..11653)
DNA (822bp) protein (274aa)
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC id=24415238 bin=RBG_19FT_COMBO_GAL15_69_19 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
rod shape-determining protein MreC
13_1_40cm_scaffold_50_14
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(11666..12703)
DNA (1038bp) protein (346aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins id=24415239 bin=RBG_19FT_COMBO_GAL15_69_19 species=Sporomusa ovata genus=Sporomusa taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
rod shape-determining protein MreB
13_1_40cm_scaffold_50_15
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(12999..13262)
DNA (264bp) protein (88aa)
hypothetical protein Tax=RBG_16_Armatimonadetes_67_12_curated
hypothetical protein id=24415241 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_scaffold_50_16
unknown

Not on your lists

comp(13309..13554)
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_40cm_scaffold_50_17
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13551..13961)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Cellulomonas sp. JC225 RepID=UPI0002E51430
Uncharacterized protein {ECO:0000313|EMBL:KGM14189.1}; TaxID=1386082 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16
13_1_40cm_scaffold_50_18
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(14001..15002)
DNA (1002bp) protein (334aa)
NAD-dependent epimerase/dehydratase; K00329 NADH dehydrogenase [EC:1.6.5.3]; K00356 NADH dehydrogenase [EC:1.6.99.3] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
NAD-dependent epimerase/dehydratase id=24415246 bin=RBG_19FT_COMBO_GAL15_69_19 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
NAD-dependent epimerase/dehydratase
13_1_40cm_scaffold_50_19
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(15053..16021)
DNA (969bp) protein (323aa)
polyprenyl synthetase id=24415247 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
polyprenyl synthetase Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
polyprenyl synthetase
13_1_40cm_scaffold_50_20
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(16101..16484)
DNA (384bp) protein (128aa)
hypothetical protein id=24415248 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
hypothetical protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
putative copper-binding protein
13_1_40cm_scaffold_50_21
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(16598..16702)
DNA (105bp) protein (35aa)
Tax=RBG_16_Armatimonadetes_67_12_curated
13_1_40cm_scaffold_50_22
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(16699..17154)
DNA (456bp) protein (152aa)
vhuD; methyl viologen-reducing hydrogenase, subunit delta; K14127 F420-non-reducing hydrogenase iron-sulfur subunit D [EC:1.12.99.-] Tax=RBG_16_Armatimonadetes_67_12_curated
methyl-viologen-reducing hydrogenase delta subunit id=24415250 bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
methyl-viologen-reducing hydrogenase delta subunit
13_1_40cm_scaffold_50_23
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(17151..18350)
DNA (1200bp) protein (400aa)
cytochrome b/b6 id=24415251 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
cytochrome b/b6 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
cytochrome b/b6
13_1_40cm_scaffold_50_24
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(18347..18550)
DNA (204bp) protein (68aa)
id=24415252 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24415252 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_50_25
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(18704..18961)
DNA (258bp) protein (86aa)
id=24415253 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
id=24415253 Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_50_26
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(18965..20137)
DNA (1173bp) protein (391aa)
qcrB; quinol-cytochrome c reductase, fused cytochrome b/c subunit (EC:1.10.2.2); K00412 ubiquinol-cytochrome c reductase cytochrome b subunit id=24415254 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
qcrB; quinol-cytochrome c reductase, fused cytochrome b/c subunit (EC:1.10.2.2); K00412 ubiquinol-cytochrome c reductase cytochrome b subunit Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
cytochrome b/b6 protein
13_1_40cm_scaffold_50_27
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(20206..20898)
DNA (693bp) protein (231aa)
id=24415255 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Tax=CSP1_3_Armatimonadetes
13_1_40cm_scaffold_50_28
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(20930..21949)
DNA (1020bp) protein (340aa)
cytochrome c family protein id=24415256 bin=RBG_19FT_COMBO_GAL15_69_19 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
cytochrome c family protein Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_50_29
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

21951..22676
DNA (726bp) protein (242aa)
heme exporter protein CcmA id=14632709 bin=bin9_gal15 species=Truepera radiovictrix genus=Truepera taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin9_gal15 organism_group=GAL15
heme exporter protein CcmA Tax=CSP1_3_Armatimonadetes
heme exporter protein CcmA
Displaying items 1-30 of 42 in total

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