ggKbase home page

13_1_40cm_scaffold_107

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_107_1
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(1..1005)
DNA (1005bp) protein (335aa)
V-type ATP synthase subunit beta; K02118 V-type H+-transporting ATPase subunit B [EC:3.6.3.14] id=24404070 bin=RBG_19FT_COMBO_GAL15_69_19 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
V-type ATP synthase subunit beta; K02118 V-type H+-transporting ATPase subunit B [EC:3.6.3.14] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
V-type ATP synthase subunit beta
13_1_40cm_scaffold_107_2
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(1068..2762)
DNA (1695bp) protein (565aa)
V-type ATP synthase subunit A (EC:3.6.3.14); K02117 V-type H+-transporting ATPase subunit A [EC:3.6.3.14] id=24404069 bin=RBG_19FT_COMBO_GAL15_69_19 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
V-type ATP synthase subunit A (EC:3.6.3.14); K02117 V-type H+-transporting ATPase subunit A [EC:3.6.3.14] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
V-type ATP synthase subunit alpha
13_1_40cm_scaffold_107_3
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(2847..3155)
DNA (309bp) protein (103aa)
Vacuolar H+transporting two-sector ATPase subunit F; K02122 V-type H+-transporting ATPase subunit F [EC:3.6.3.14] id=24404068 bin=RBG_19FT_COMBO_GAL15_69_19 species=Truepera radiovictrix genus=Truepera taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
Vacuolar H+transporting two-sector ATPase subunit F; K02122 V-type H+-transporting ATPase subunit F [EC:3.6.3.14] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
Vacuolar H+transporting two-sector ATPase subunit F
13_1_40cm_scaffold_107_4
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(3157..4188)
DNA (1032bp) protein (344aa)
H+transporting two-sector ATPase C (AC39) subunit; K02119 V-type H+-transporting ATPase subunit C [EC:3.6.3.14] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
atpC-2; A-type ATP synthase subunit C (EC:3.6.3.14); K02119 V-type H+-transporting ATPase subunit C [EC:3.6.3.14] id=24404067 bin=RBG_19FT_COMBO_GAL15_69_19 species=Methanolinea tarda genus=Methanolinea taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
H+transporting two-sector ATPase C (AC39) subunit
13_1_40cm_scaffold_107_5
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(4255..4833)
DNA (579bp) protein (193aa)
H+transporting two-sector ATPase subunit E; K02121 V-type H+-transporting ATPase subunit E [EC:3.6.3.14] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
H+transporting two-sector ATPase subunit E; K02121 V-type H+-transporting ATPase subunit E [EC:3.6.3.14] id=24404066 bin=RBG_19FT_COMBO_GAL15_69_19 species=Truepera radiovictrix genus=Truepera taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
H+-transporting two-sector ATPase subunit E
13_1_40cm_scaffold_107_6
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(4833..5204)
DNA (372bp) protein (124aa)
h+transporting two-sector atpase c subunit; K02124 V-type H+-transporting ATPase subunit K [EC:3.6.3.14] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
h+transporting two-sector atpase c subunit; K02124 V-type H+-transporting ATPase subunit K [EC:3.6.3.14] id=24404065 bin=RBG_19FT_COMBO_GAL15_69_19 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
H+transporting two-sector ATPase subunit C
13_1_40cm_scaffold_107_7
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(5270..7255)
DNA (1986bp) protein (662aa)
archaeal/vacuolar-type H+-ATPase subunit I id=24404064 bin=RBG_19FT_COMBO_GAL15_69_19 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
archaeal/vacuolar-type H+-ATPase subunit I Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
V-type ATPase 116 kDa subunit
13_1_40cm_scaffold_107_8
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(7252..7662)
DNA (411bp) protein (137aa)
V-type ATPase subunit id=24404063 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermus igniterrae genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
V-type ATPase subunit Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
13_1_40cm_scaffold_107_9
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(7938..9383)
DNA (1446bp) protein (482aa)
proton-translocating NADH-quinone oxidoreductase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] id=24404061 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
proton-translocating NADH-quinone oxidoreductase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
nuoN; NADH-quinone oxidoreductase subunit N (NADH dehydrogenase I, chain N) (NDH-1, chain N) (EC:1.6.99.5 1.6.5.3)
13_1_40cm_scaffold_107_10
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(9388..10881)
DNA (1494bp) protein (498aa)
nuoM; NADH dehydrogenase I subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] id=24404060 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
nuoM; NADH dehydrogenase I subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
NADH dehydrogenase subunit M
13_1_40cm_scaffold_107_11
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(10981..12909)
DNA (1929bp) protein (643aa)
nuoL; proton-translocating NAD(P)H-quinone oxidoreductase, chain L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] id=24404059 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
nuoL; proton-translocating NAD(P)H-quinone oxidoreductase, chain L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
proton-translocating NADH-quinone oxidoreductase subunit L
13_1_40cm_scaffold_107_12
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(12947..13258)
DNA (312bp) protein (104aa)
nuoK; proton-translocating NADH-ubiquinone oxidoreductase subunit k; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] id=24404058 bin=RBG_19FT_COMBO_GAL15_69_19 species=Heliobacillus mobilis genus=Heliobacillus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
nuoK; proton-translocating NADH-ubiquinone oxidoreductase subunit k; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
NADH dehydrogenase subunit K (EC:1.6.5.3)
13_1_40cm_scaffold_107_13
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(13332..13823)
DNA (492bp) protein (164aa)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] id=24404057 bin=RBG_19FT_COMBO_GAL15_69_19 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
NADH-ubiquinone/plastoquinone oxidoreductase subunit 6
13_1_40cm_scaffold_107_14
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(13827..15005)
DNA (1179bp) protein (393aa)
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] id=24404056 bin=RBG_19FT_COMBO_GAL15_69_19 tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
respiratory-chain NADH dehydrogenase subunit 1
13_1_40cm_scaffold_107_15
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(15086..15451)
DNA (366bp) protein (122aa)
NADH dehydrogenase subunit A (EC:1.6.5.3); K05574 NAD(P)H-quinone oxidoreductase subunit 3 [EC:1.6.5.3] id=14631228 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin9_gal15 organism_group=GAL15
NADH dehydrogenase subunit A (EC:1.6.5.3); K05574 NAD(P)H-quinone oxidoreductase subunit 3 [EC:1.6.5.3] Tax=CSP1_3_Armatimonadetes
NADH dehydrogenase subunit A (EC:1.6.5.3)
13_1_40cm_scaffold_107_16
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(15584..16909)
DNA (1326bp) protein (442aa)
Putative gluconeogenesis factor n=5 Tax=Pelosinus fermentans RepID=I8S1P1_9FIRM
hypothetical protein Tax=RBG_16_Armatimonadetes_67_12_curated
putative protein family UPF0052
13_1_40cm_scaffold_107_17
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(16913..17821)
DNA (909bp) protein (303aa)
UPF0042 nucleotide-binding protein Desku_3300 n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CN90_DESK7
hypothetical protein; K06958 UPF0042 nucleotide-binding protein Tax=RBG_16_Armatimonadetes_67_12_curated
hypothetical protein
13_1_40cm_scaffold_107_18
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(17917..18255)
DNA (339bp) protein (113aa)
membrane protein n=1 Tax=Deinococcus aquatilis RepID=UPI00037985D7
hypothetical protein; K08972 putative membrane protein Tax=RBG_16_Armatimonadetes_67_12_curated
hypothetical protein
13_1_40cm_scaffold_107_19
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(18318..19184)
DNA (867bp) protein (289aa)
succinyl-CoA synthetase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=RBG_16_Armatimonadetes_67_12_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4Q1_SPHTD
succinyl-CoA synthetase, alpha subunit
13_1_40cm_scaffold_107_20
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(19196..20299)
DNA (1104bp) protein (368aa)
sucC; succinyl-CoA synthetase beta chain (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] Tax=RBG_16_Armatimonadetes_67_12_curated
succinyl-CoA synthetase, beta subunit (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4Q0_SPHTD
13_1_40cm_scaffold_107_21
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(20420..21040)
DNA (621bp) protein (207aa)
N-acetylglutamate synthase (EC:2.3.1.1) Tax=RBG_16_Armatimonadetes_67_12_curated
GCN5-related N-acetyltransferase id=3547230 bin=GWC2_Ignavibacteria_56_12 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
GNAT family acetyltransferase
13_1_40cm_scaffold_107_22
unknown

Not on your lists

comp(21061..21663)
DNA (603bp) protein (201aa)

This feature has no annotations

13_1_40cm_scaffold_107_23
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(21686..22618)
DNA (933bp) protein (311aa)
malate dehydrogenase (NAD) (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] id=24416843 bin=RBG_19FT_COMBO_GAL15_69_19 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
malate dehydrogenase (NAD) (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
malate dehydrogenase (NAD) (EC:1.1.1.37)
13_1_40cm_scaffold_107_24
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(22644..23891)
DNA (1248bp) protein (416aa)
icd; isocitrate dehydrogenase, nADP-dependent; K00031 isocitrate dehydrogenase [EC:1.1.1.42] id=24416842 bin=RBG_19FT_COMBO_GAL15_69_19 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
icd; isocitrate dehydrogenase, nADP-dependent; K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
icd; isocitrate dehydrogenase, nADP-dependent
13_1_40cm_scaffold_107_25
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

25787..27469
DNA (1683bp) protein (561aa)
frdA; Putative fumarate reductase [flavoprotein subunit] FrdA (fumarate dehydrogenase) (fumaric hydrogenase) (EC:1.3.99.1)
fumarate reductase flavoprotein subunit id=14631497 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
fumarate reductase flavoprotein subunit Tax=CSP1_3_Armatimonadetes
13_1_40cm_scaffold_107_26
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

27466..27633
DNA (168bp) protein (56aa)
frdBC; putative fumarate reductase; K00245 fumarate reductase iron-sulfur subunit [EC:1.3.99.1] id=14424438 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
frdB; Fumarate reductase (anaerobic), Fe-S subunit (EC:1.3.99.1) Tax=CSP1_3_Armatimonadetes
frdB; Fumarate reductase iron-sulfur subunit (EC:1.3.99.1)
Displaying 26 items

View Taxonomy