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13_1_40cm_scaffold_5120

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_5120_1
unknown

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2..199
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_scaffold_5120_2
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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202..1308
DNA (1107bp) protein (369aa)
coproporphyrinogen III oxidase, anaerobic (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Oxygen-independent coproporphyrinogen III oxidase, putative n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z865_DEHE1
oxygen-independent coproporphyrinogen III oxidase
13_1_40cm_scaffold_5120_3
Desulfotomaculum hydrothermale, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1341..1631
DNA (291bp) protein (97aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8E8Q9_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1121428 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; De
heat shock gene repressor HrcA
13_1_40cm_scaffold_5120_4

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1700..2281
DNA (582bp) protein (194aa)
Heat-inducible transcription repressor HrcA (Fragment) n=1 Tax=mine drainage metagenome RepID=T0YFM1_9ZZZZ
Heat-inducible transcription repressor HrcA {ECO:0000313|EMBL:EQD34206.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage
heat-inducible transcription repressor HrcA
13_1_40cm_scaffold_5120_5
Geobacillus sp. G1w1, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2316..2912
DNA (597bp) protein (199aa)
molecular chaperone GrpE n=1 Tax=Paenibacillus sp. JC66 RepID=UPI0002884573
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1430331 species="Bacteria; Firmicutes; Bacilli; Bacillales; Baci
molecular chaperone GrpE
13_1_40cm_scaffold_5120_6
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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2930..4054
DNA (1125bp) protein (375aa)
Chaperone protein DnaJ n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2P5_THEOJ
chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family I
13_1_40cm_scaffold_5120_7
unknown

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4171..4470
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_scaffold_5120_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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4593..8165
DNA (3573bp) protein (1191aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QHF3_9ZZZZ
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
diguanylate cyclase
13_1_40cm_scaffold_5120_9
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8162..8908)
DNA (747bp) protein (249aa)
Transcriptional repressor DcmR n=2 Tax=Rhizobiales RepID=DCMR_METED
excisionase family DNA binding domain-containing protein
DNA binding domain protein, excisionase family {ECO:0000313|EMBL:ADJ22530.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" sou
13_1_40cm_scaffold_5120_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8908..9615)
DNA (708bp) protein (236aa)
Transcriptional repressor DcmR n=2 Tax=Rhizobiales RepID=DCMR_METED
excisionase family DNA binding domain-containing protein
DNA binding domain protein, excisionase family {ECO:0000313|EMBL:ADJ22530.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" sou
13_1_40cm_scaffold_5120_11
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9740..10666
DNA (927bp) protein (309aa)
LysR family transcriptional regulator n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UMQ6_MYXSD
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AGC49288.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;"
13_1_40cm_scaffold_5120_12
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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10797..11597
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Methanobrevibacter smithii CAG:186 RepID=R7PUX8_9EURY
spsK; Spore coat polysaccharide biosynthesis protein spsK Tax=RBG_13_Deltaproteobacteria_61_14_curated
dTDP-4-dehydrorhamnose reductase
13_1_40cm_scaffold_5120_13
GWB1_OD1_37_5, Nomurabacteria, Parcubacteria, Bacteria

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11912..14110
DNA (2199bp) protein (733aa)
PE-PGRS FAMILY protein n=23 Tax=Mycobacterium tuberculosis RepID=L0NYE3_MYCTU id=5087020 bin=GWF1_OP11_31_35_complete species=Mycobacterium tuberculosis genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
Glycosyl transferase family 2 Tax=GWB1_OD1_37_5
putative glycosyltransferase
13_1_40cm_scaffold_5120_14
R_OP11_45_11, Microgenomates, Bacteria

Not on your lists

14234..14746
DNA (513bp) protein (171aa)
Exosortase EpsH-related protein Tax=RIFCSPHIGHO2_01_FULL_OP11_45_11_curated
transmembrane_regions 107..129 id=1246952 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
13_1_40cm_scaffold_5120_15
R_OP11_45_11, Microgenomates, Bacteria

Not on your lists

14762..16990
DNA (2229bp) protein (743aa)
Glycosyltransferase n=1 Tax=uncultured marine crenarchaeote E6-3G RepID=G9BAK6_9CREN id=1246954 bin=RBG9 species=uncultured marine crenarchaeote E6-3G genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=RBG9 organism_group=Chloroflexi
alpha-1,3/1,6-mannosyltransferase ALG2-like Tax=RIFCSPHIGHO2_01_FULL_OP11_45_11_curated
hypothetical protein
13_1_40cm_scaffold_5120_16
GWA1_OP11_39_11, Levybacteria, Microgenomates, Bacteria

Not on your lists

16987..18651
DNA (1665bp) protein (555aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ95470.1}; TaxID=1618453 species="Bacteria; Microgenomates.;" source="Microgenomates (Levybacteria) bacterium GW2011_GWA1_39_11.;"
seg 247..258 id=1246956 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
13_1_40cm_scaffold_5120_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

18737..19666
DNA (930bp) protein (310aa)
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative uncharacterized protein id=2908069 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Displaying 17 items

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