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13_1_40cm_scaffold_860

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_860_1
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(3..359)
DNA (357bp) protein (119aa)
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; TaxID=319795 species="Bacteria; Deinococcus-Thermus;
Thymidylate kinase n=1 Tax=Deinococcus geothermalis (strain DSM 11300) RepID=Q1IWV7_DEIGD
thymidylate kinase
13_1_40cm_scaffold_860_2
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(360..1940)
DNA (1581bp) protein (527aa)
single-stranded nucleic acid binding R3H domain-containing protein id=14633013 bin=bin9_gal15 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
single-stranded nucleic acid binding R3H domain-containing protein Tax=CSP1_3_Armatimonadetes
single-stranded nucleic acid binding R3H
13_1_40cm_scaffold_860_3
unknown

Not on your lists

comp(1937..2905)
DNA (969bp) protein (323aa)

This feature has no annotations

13_1_40cm_scaffold_860_4
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2902..3453)
DNA (552bp) protein (184aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase g
Glutamine amidotransferase subunit PdxT n=1 Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WPH0_9ACTO
glutamine amidotransferase subunit PdxT
13_1_40cm_scaffold_860_5
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(3500..4426)
DNA (927bp) protein (309aa)
pdxS; pyridoxal biosynthesis lyase PdxS (EC:4.-.-.-) Tax=RBG_13_Chloroflexi_54_9_curated
atm:ANT_01650 pdxS; pyridoxal biosynthesis lyase PdxS; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-] id=1244770 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
pyridoxal biosynthesis lyase PdxS
13_1_40cm_scaffold_860_6
unknown

Not on your lists

comp(4550..5110)
DNA (561bp) protein (187aa)

This feature has no annotations

13_1_40cm_scaffold_860_7
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(5134..5901)
DNA (768bp) protein (256aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KDW1_9FIRM
ECF subfamily RNA polymerase sigma-24 subunit Tax=RBG_13_Chloroflexi_68_17_curated
RNA polymerase sigma factor, sigma-70 family
13_1_40cm_scaffold_860_8
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(5898..7034)
DNA (1137bp) protein (379aa)
Glycerate kinase {ECO:0000313|EMBL:EAX46519.1}; EC=2.7.1.31 {ECO:0000313|EMBL:EAX46519.1};; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;"
glycerate kinase (EC:2.7.1.31)
Glycerate kinase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTZ8_9FIRM
13_1_40cm_scaffold_860_9
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(7053..8018)
DNA (966bp) protein (322aa)
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Branched-chain amino acid aminotransferase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B865_HERA2
branched-chain amino acid aminotransferase
13_1_40cm_scaffold_860_10
unknown

Not on your lists

8150..8455
DNA (306bp) protein (102aa)

This feature has no annotations

13_1_40cm_scaffold_860_11
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

8448..8939
DNA (492bp) protein (164aa)
UPF0234 protein SynRCC307_1657 n=1 Tax=Synechococcus sp. (strain RCC307) RepID=A5GUK1_SYNR3
UPF0234 protein yajQ
UPF0234 protein Glo7428_2801 {ECO:0000256|HAMAP-Rule:MF_00632}; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
13_1_40cm_scaffold_860_12
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8974..9675
DNA (702bp) protein (234aa)
hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase HisA (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMI4_CLOSH
13_1_40cm_scaffold_860_13
unknown

Not on your lists

9672..10079
DNA (408bp) protein (136aa)

This feature has no annotations

13_1_40cm_scaffold_860_14
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10287..10952)
DNA (666bp) protein (222aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HMF9_9BACL
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EJY55328.1}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacill
hypothetical protein
13_1_40cm_scaffold_860_15
unknown

Not on your lists

11025..11474
DNA (450bp) protein (150aa)

This feature has no annotations

13_1_40cm_scaffold_860_16
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11582..12103)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GLM2_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN90294.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium ce
13_1_40cm_scaffold_860_17
unknown

Not on your lists

comp(12103..12585)
DNA (483bp) protein (161aa)

This feature has no annotations

13_1_40cm_scaffold_860_18
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

12712..13839
DNA (1128bp) protein (376aa)
Putative uncharacterized protein n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RJS4_MOOTA
Genome assembly strain_NMP_1 {ECO:0000313|EMBL:CEP67931.1}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="
hypothetical protein
13_1_40cm_scaffold_860_19
unknown

Not on your lists

comp(13836..14288)
DNA (453bp) protein (151aa)

This feature has no annotations

13_1_40cm_scaffold_860_20
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(14234..15091)
DNA (858bp) protein (286aa)
hypothetical protein Tax=RBG_13_Chloroflexi_66_10_curated
Hypothetical membrane protein id=4317575 bin=GWC2_Chloroflexi_49_37 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
hypothetical protein
13_1_40cm_scaffold_860_21
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(15063..15836)
DNA (774bp) protein (258aa)
ABC transporter related protein n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IBA4_9CHLR
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein Tax=RBG_16_Chloroflexi_56_8_curated
ABC transporter-like protein
13_1_40cm_scaffold_860_22
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15960..16874)
DNA (915bp) protein (305aa)
pyrD; oxidoreductase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=GWC2_Pelobacteraceae_58_13_curated
Dihydroorotate dehydrogenase id=4069925 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
dihydroorotate dehydrogenase family protein
13_1_40cm_scaffold_860_23
RBG_13_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(16871..17629)
DNA (759bp) protein (253aa)
Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QMI6_DESB2
oxidoreductase FAD/NAD(P)-binding, dihydroorotate dehydrogenase-like protein; K02823 dihydroorotate dehydrogenase electron transfer subunit Tax=RBG_13_Chloroflexi_57_8_curated
dihydroorotate dehydrogenase electron transfer subunit
13_1_40cm_scaffold_860_24
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(17616..21944)
DNA (4329bp) protein (1443aa)
carbamoyl-phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=RBG_16_Chloroflexi_51_9_curated
Carbamoyl-phosphate synthase large chain n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2A6_SPHTD
carbamoyl-phosphate synthase large subunit
13_1_40cm_scaffold_860_25
unknown

Not on your lists

comp(21934..22068)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_scaffold_860_26
unknown

Not on your lists

22121..22450
DNA (330bp) protein (110aa)

This feature has no annotations

13_1_40cm_scaffold_860_27
RLO_PLX_64_10, Bacteria

Not on your lists

comp(22384..23310)
DNA (927bp) protein (309aa)
Aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=uncultured bacterium HF0500_16O16 RepID=E0XYF5_9BACT
13_1_40cm_scaffold_860_28
unknown

Not on your lists

23407..23733
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_scaffold_860_29
R_RIF_OD1_01_48_11, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

23730..24455
DNA (726bp) protein (242aa)
ABC-type Na+ transport system, ATPase component n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGB6_CHLTF
ABC transporter; K09697 sodium transport system ATP-binding protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_01_48_11_curated
Na+ ABC transporter ATPase
13_1_40cm_scaffold_860_30
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

24455..25591
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI000364B18E
Na+ ABC efflux pump permease; K09696 sodium transport system permease protein Tax=RBG_13_Chloroflexi_66_10_curated
Na+ ABC transporter permease
Displaying items 1-30 of 40 in total

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