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13_1_40cm_scaffold_3154_8

Organism: 13_1_40CM_Actinobacteria_66_12

partial RP 21 / 55 BSCG 18 / 51 ASCG 4 / 38
Location: comp(5011..5937)

Top 3 Functional Annotations

Value Algorithm Source
Glycine betaine/choline-binding protein of an ABC-type transport system Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 46.3
  • Coverage: 296.0
  • Bit_score: 252
  • Evalue 6.10e-64
Substrate-binding region of ABC-type glycine betaine transport system id=4709202 bin=GWC2_Chloroflexi_73_18 species=Intrasporangium calvum genus=Intrasporangium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good + similarity UNIREF
DB: UNIREF100
  • Identity: 39.3
  • Coverage: 328.0
  • Bit_score: 224
  • Evalue 1.30e-55
quaternary ammonium transporter similarity KEGG
DB: KEGG
  • Identity: 45.1
  • Coverage: 266.0
  • Bit_score: 221
  • Evalue 3.10e-55

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Taxonomy

RLO_RIF_CHLX_71_12 → Chloroflexi → Bacteria

Sequences

DNA sequence
Length: 927
ATGAATTCAAAGCTCGGTTCTGGGAGATTCCTGGCGGCGGTCGCCACACTGGTTTTCGTGGCCGCCGCGTGTGGAAGCACCGGCGGTGGCGGGAATCCGAGCCCGGCTTCCAAGGGCACGCTCACTGTTGCGGGTTTCAACTTCCCCGAGAGCAGCATCCTGGCCGAGATCTACGGCCAGGCGCTCGCGCACGACGGTTACACGATCAACTACAAGCTGCTGCTGGGTACGCGCGAGGTCGTAGCGCCTGCGCTCGAGTCGGGCCAGATCGACGTGTATCCCGGCTACGCGGCGACCGACCTCGAGTTCTACAACAAGGGCGCCGGCGAAGCCAATGGCGACGCCACCGCCACCACGACCAAGCTCAACAGCCACCTGGCGCCGCTTGGGCTCGTCGCGCTCGACCCCTCGGCGGCCGTCGACCAGAACGCATTCGCGGTCACCAAGGCCACCCAGACCAAGTTCAGCCTCACCAAGCTGTCCGACCTCGCGCCGATCGGCAGCCAGCTGACCCTGGGCGCCGGGCCCGAATGCCCGACGCGTCCTTTCTGCCAACCCGGGCTCAAAAACACATATGGCATCACCTTCAAGGCCTTCAAGCCGCTCGACACCGATGGGCCCCTGACGCGCGCCGCGTTCAAGAACGGCAGCATCGACGTCGGCCTGGTGTTCAGCAGCGACGGTGACCTCAACTCGCTCGGGCTGGTCGTGCTTCAGGACGACAAGCACCTCGAGAACGCGGACAACGTGGTCCCGATCCTCCGTCAGGCCGCGGCGAGCGACGAGGTCAAGAAGGTGCTCAACGCGATCGACGCGAAGCTGACCACGGCTGACCTGGTGACCTTGAACTCGCAAGTCTCGATCCAGCACCAGGACGCCGACGCCGTCGCGACGGCGTGGCTGCAGCAGCACAACTACGCGAGCTAG
PROTEIN sequence
Length: 309
MNSKLGSGRFLAAVATLVFVAAACGSTGGGGNPSPASKGTLTVAGFNFPESSILAEIYGQALAHDGYTINYKLLLGTREVVAPALESGQIDVYPGYAATDLEFYNKGAGEANGDATATTTKLNSHLAPLGLVALDPSAAVDQNAFAVTKATQTKFSLTKLSDLAPIGSQLTLGAGPECPTRPFCQPGLKNTYGITFKAFKPLDTDGPLTRAAFKNGSIDVGLVFSSDGDLNSLGLVVLQDDKHLENADNVVPILRQAAASDEVKKVLNAIDAKLTTADLVTLNSQVSIQHQDADAVATAWLQQHNYAS*