ggKbase home page

13_1_40cm_scaffold_7697

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_7697_trna_1
unknown

Not on your lists

23..104
DNA (82bp)
transferRNA
13_1_40cm_scaffold_7697_1
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(56..814)
DNA (759bp) protein (253aa)
Intein-containing protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Intein-containing protein id=1906307 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_7697_2
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(975..2612)
DNA (1638bp) protein (546aa)
Extracellular solute-binding protein family 5 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C367_SPHTD
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
family 5 extracellular solute-binding protein
13_1_40cm_scaffold_7697_3
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(2613..2834)
DNA (222bp) protein (74aa)
preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Preprotein translocase, SecG subunit id=4775469 bin=GWC2_Chloroflexi_73_18 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
preprotein translocase subunit SecG
13_1_40cm_scaffold_7697_4
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(2853..4232)
DNA (1380bp) protein (460aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
13_1_40cm_scaffold_7697_5
unknown

Not on your lists

4684..4989
DNA (306bp) protein (102aa)

This feature has no annotations

13_1_40cm_scaffold_7697_6
unknown

Not on your lists

5221..5553
DNA (333bp) protein (111aa)

This feature has no annotations

13_1_40cm_scaffold_7697_7
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(5673..6416)
DNA (744bp) protein (248aa)
Triosephosphate isomerase (EC:5.3.1.1) Tax=RBG_16_RIF_CHLX_69_14_curated
Triosephosphate isomerase id=4775466 bin=GWC2_Chloroflexi_73_18 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
tpiA; triosephosphate isomerase
13_1_40cm_scaffold_7697_8
Desulfotomaculum hydrothermale, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6416..7309)
DNA (894bp) protein (298aa)
UPF0042 nucleotide-binding protein DESHY_110519 n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8E7T3_9FIRM
Nucleotide-binding protein DESHY_110519 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1121428 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfoto
hypothetical protein
13_1_40cm_scaffold_7697_9
Arthrobacter gangotriensis, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7291..7680)
DNA (390bp) protein (130aa)
Integral membrane protein n=1 Tax=Arthrobacter gangotriensis Lz1y RepID=M7MZW0_9MICC
Integral membrane protein {ECO:0000313|EMBL:EMR00587.1}; TaxID=1276920 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter gangotriensis Lz1y.;"
membrane protein
13_1_40cm_scaffold_7697_10
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(7711..8532)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI00035D3F76
ABC transporter permease; K09686 antibiotic transport system permease protein Tax=RBG_16_Chloroflexi_57_11_curated
ABC transporter permease
13_1_40cm_scaffold_7697_11
BJP_08E140C01_Anaerolineales_40_8, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(8532..9374)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI00036532ED
ABC transporter permease
Tax=BJP_08E140C01_Anaerolineales_40_8
13_1_40cm_scaffold_7697_12
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(9371..10384)
DNA (1014bp) protein (338aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZT4_ANATU
putative ABC transporter ATP-binding protein; K09687 antibiotic transport system ATP-binding protein Tax=RBG_16_Chloroflexi_57_11_curated
putative ABC transporter ATP-binding protein
13_1_40cm_scaffold_7697_13
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(10381..10788)
DNA (408bp) protein (136aa)
Tax=BJP_IG2102_Coriobacteriales_64_17
13_1_40cm_scaffold_7697_14
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(10789..12090)
DNA (1302bp) protein (434aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Uncharacterized conserved secreted protein id=3744531 bin=GWC2_Chloroflexi_49_37 species=Idiomarina loihiensis genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
lipoprotein
13_1_40cm_scaffold_7697_15
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(12087..12332)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Dehalobacter sp. E1 RepID=UPI00037D329D
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
hypothetical protein
13_1_40cm_scaffold_7697_16
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(12891..13505)
DNA (615bp) protein (205aa)
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C id=14630473 bin=bin8_Chloro species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
uvrC; excinuclease ABC subunit C
13_1_40cm_scaffold_7697_17
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(13502..14176)
DNA (675bp) protein (225aa)
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
UvrABC system protein C id=4775455 bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
excinuclease ABC subunit C
Displaying 18 items

View Taxonomy