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13_1_40cm_scaffold_5503

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_5503_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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1..597
DNA (597bp) protein (199aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA6_9BACT
13_1_40cm_scaffold_5503_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

645..1415
DNA (771bp) protein (257aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
tpiA; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA5_9BACT
13_1_40cm_scaffold_5503_3
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

1446..1817
DNA (372bp) protein (124aa)
Preprotein translocase, membrane subunit SecG n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA4_9BACT
secG; preprotein translocase, membrane subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
secG; preprotein translocase, membrane subunit SecG
13_1_40cm_scaffold_5503_4
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(1868..2782)
DNA (915bp) protein (305aa)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA3_9BACT
13_1_40cm_scaffold_5503_5
unknown

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comp(2948..3214)
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_scaffold_5503_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists


3340..3921
DNA (582bp) protein (194aa)
50S ribosomal protein L21 n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA2_9BACT
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
rplU; 50S ribosomal protein L21
13_1_40cm_scaffold_5503_7
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3972..4346
DNA (375bp) protein (125aa)
narL; two component system DNA-binding response regulator Tax=RBG_16_Betaproteobacteria_64_18_curated
Response regulator receiver protein id=3068380 bin=GWC2_Methylomirabilis_70_16 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator receiver domain-containing protein
13_1_40cm_scaffold_5503_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

4527..5549
DNA (1023bp) protein (341aa)
GTPase Obg n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PCA0_9BACT
obgE; GTPase involved in DNA replication and ribosome assembly; K03979 GTP-binding protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
obgE; GTPase involved in DNA replication and ribosome assembly
13_1_40cm_scaffold_5503_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

5531..6652
DNA (1122bp) protein (374aa)
proB; glutamat 5-kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
proB; glutamat 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC99_9BACT
13_1_40cm_scaffold_5503_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

6741..7427
DNA (687bp) protein (229aa)
nadD; nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
nadD; nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC98_9BACT
13_1_40cm_scaffold_5503_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7558..7833
DNA (276bp) protein (92aa)
Ribosomal silencing factor RsfS n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC97_9BACT
hypothetical protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_scaffold_5503_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

7837..9237
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC96_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
hypothetical protein
13_1_40cm_scaffold_5503_13
unknown

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comp(9204..9479)
DNA (276bp) protein (92aa)

This feature has no annotations

13_1_40cm_scaffold_5503_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

9826..10200
DNA (375bp) protein (125aa)
bioB; biotin synthase (EC:2.8.1.6)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=330214 species="Bacteria; Nitrospi
Biotin synthase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC95_9BACT
Displaying 14 items

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