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13_1_40cm_scaffold_11494

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_11494_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(1..816)
DNA (816bp) protein (272aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF5_9BACT
13_1_40cm_scaffold_11494_2

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comp(899..2677)
DNA (1779bp) protein (593aa)
DNA mismatch repair protein MutL n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VSQ3_9BACT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1256584 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_560.;
mutL; DNA mismatch repair protein MutL
13_1_40cm_scaffold_11494_3
unknown

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comp(2784..2990)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_scaffold_11494_4
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(2987..3379)
DNA (393bp) protein (131aa)
Putative Tol-Pal system protein YbgF n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF7_9BACT
putative tol-Pal system protein YbgF
Putative Tol-Pal system protein YbgF {ECO:0000313|EMBL:CBK43044.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_scaffold_11494_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(3953..4984)
DNA (1032bp) protein (344aa)
Putative Tol-Pal system protein YbgF (Modular protein) n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF8_9BACT
putative tol-Pal system protein YbgF
Putative Tol-Pal system protein YbgF (Modular protein) {ECO:0000313|EMBL:CBK43045.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitro
13_1_40cm_scaffold_11494_6
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(5024..5647)
DNA (624bp) protein (208aa)
Peptidoglycan-associated lipoprotein Pal (Modular protein) n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIF9_9BACT
pal; peptidoglycan-associated lipoprotein pal; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
pal; peptidoglycan-associated lipoprotein pal
13_1_40cm_scaffold_11494_7

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comp(5730..7055)
DNA (1326bp) protein (442aa)
TolB protein, periplasmic protein involved in the tonb-independent uptake of group A colicins n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VXH2_9BACT
TolB protein, periplasmic protein involved in the tonb-independent uptake of group A colicins {ECO:0000313|EMBL:AGC72141.1}; TaxID=1256584 species="Bacteria; environmental samples.;" source="unculture
tolB; protein TolB
13_1_40cm_scaffold_11494_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(7052..7465)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIG1_9BACT
TonB family protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative protein TolA
13_1_40cm_scaffold_11494_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(8042..8494)
DNA (453bp) protein (151aa)
Protein TolR n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIG2_9BACT
tolR; protein TolR; K03560 biopolymer transport protein TolR Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
tolR; protein TolR
13_1_40cm_scaffold_11494_10
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(8491..9213)
DNA (723bp) protein (241aa)
MotA/TolQ/ExbB proton channel family protein n=1 Tax=uncultured bacterium A1Q1_fos_560 RepID=L7VX00_9BACT
tolQ; protein TolQ; K03562 biopolymer transport protein TolQ Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
tolQ; protein TolQ
13_1_40cm_scaffold_11494_trna_2
unknown

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comp(9454..9529)
DNA (76bp)
transferRNA
13_1_40cm_scaffold_11494_trna_1
unknown

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comp(9621..9693)
DNA (73bp)
transferRNA
13_1_40cm_scaffold_11494_11
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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comp(9792..10751)
DNA (960bp) protein (320aa)
Tyrosine recombinase XerD n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AN46_PELPD
tyrosine recombinase XerD; K04763 integrase/recombinase XerD Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
tyrosine recombinase XerD
13_1_40cm_scaffold_11494_12
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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10804..12840
DNA (2037bp) protein (679aa)
Putative Extracellular ligand-binding receptor n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIG5_9BACT
putative extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative extracellular ligand-binding receptor
13_1_40cm_scaffold_11494_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

12869..13363
DNA (495bp) protein (165aa)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PIG6_9BACT
Displaying 15 items

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