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13_1_40cm_scaffold_3876

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3876_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3..356)
DNA (354bp) protein (118aa)
Putative transmembrane anti-sigma factor Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein id=14429394 bin=bin3_NC10 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
13_1_40cm_scaffold_3876_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(353..904)
DNA (552bp) protein (184aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAG7_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase sigma factor, sigma-70 family
13_1_40cm_scaffold_3876_3
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

972..1670
DNA (699bp) protein (233aa)
High-affinity nickel-transporter protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5F2_GEMAT
high-affinity nickel-transporter protein
High-affinity nickel-transporter protein {ECO:0000313|EMBL:BAH37462.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aura
13_1_40cm_scaffold_3876_4
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(1667..2785)
DNA (1119bp) protein (373aa)
glycosyl transferase family 2 protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
glycosyl transferase family 2
glycosyl transferase family protein id=14425471 bin=bin1_lowGC species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
13_1_40cm_scaffold_3876_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2782..4014)
DNA (1233bp) protein (411aa)
Sodium:dicarboxylate symporter n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MH92_RHOM4
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
sodium:dicarboxylate symporter
13_1_40cm_scaffold_3876_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4056..4850
DNA (795bp) protein (265aa)
short-chain dehydrogenase Tax=RBG_16_Gemmatimonadetes_66_8_curated
short-chain dehydrogenase id=14429590 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
short-chain dehydrogenase
13_1_40cm_scaffold_3876_7
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4919..5422
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAG0_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_3876_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

5516..6007
DNA (492bp) protein (164aa)
DtxR family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAF6_GEMAT
DtxR family transcriptional regulator; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
DtxR family transcriptional regulator
13_1_40cm_scaffold_3876_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

6137..7228
DNA (1092bp) protein (364aa)
Divalent metal cation transporter MntH n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAF8_GEMAT
mntH; putative manganese transport protein MntH; K03322 manganese transport protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Manganese transport protein mntH
13_1_40cm_scaffold_3876_10
Chamaesiphon minutus, Chamaesiphon, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

7225..7425
DNA (201bp) protein (67aa)
Divalent metal cation transporter MntH n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UE14_9CHRO
natural resistance-associated macrophage protein metal ion transporter NRAMP
Divalent metal cation transporter MntH {ECO:0000256|HAMAP-Rule:MF_00221}; TaxID=1173020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Chamaesiphon.;" source="Chamaesiphon min
13_1_40cm_scaffold_3876_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

7425..7859
DNA (435bp) protein (145aa)
Universal stress protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAF7_GEMAT
UspA domain-containing protein
UspA domain-containing protein {ECO:0000313|EMBL:AHG91899.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3876_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(7810..8775)
DNA (966bp) protein (322aa)
Putative hydroxlacyl-CoA dehydrogenase n=1 Tax=Bordetella bronchiseptica 1289 RepID=K4U0W1_BORBO
hydroxlacyl-CoA dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hydroxlacyl-CoA dehydrogenase
13_1_40cm_scaffold_3876_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8772..9701)
DNA (930bp) protein (310aa)
Inosine/uridine-preferring nucleoside hydrolase; K01250 pyrimidine-specific ribonucleoside hydrolase [EC:3.2.-.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Inosine/uridine-preferring nucleoside hydrolase n=2 Tax=Chloroflexus RepID=A9WE72_CHLAA
inosine/uridine-preferring nucleoside hydrolase
13_1_40cm_scaffold_3876_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(9719..11569)
DNA (1851bp) protein (617aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000379DB1A
Pyrrolo-quinoline quinone beta-propeller repeat-containing protein
Pyrrolo-quinoline quinone beta-propeller repeat-containing protein {ECO:0000313|EMBL:AHG88769.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3876_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11544..12458)
DNA (915bp) protein (305aa)
Alkyl hydroperoxide reductase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU88_9AQUI
resA; thiol-disulfide oxidoreductase Tax=RBG_16_Gemmatimonadetes_66_8_curated
thiol-disulfide isomerase-like thioredoxin
13_1_40cm_scaffold_3876_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12827..13213
DNA (387bp) protein (129aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_scaffold_3876_17
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13227..13544)
DNA (318bp) protein (106aa)
Uncharacterized protein {ECO:0000313|EMBL:KFN49906.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas compost
13_1_40cm_scaffold_3876_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13691..14707)
DNA (1017bp) protein (339aa)
Protein of unknown function DUF2329
Uncharacterized protein {ECO:0000313|EMBL:AHG89210.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein id=24457720 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_40cm_scaffold_3876_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15091..18102)
DNA (3012bp) protein (1004aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00037BBCDE
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AHG89209.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3876_20
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

18235..20331
DNA (2097bp) protein (699aa)
beta-glucosidase (EC:3.2.1.21)
Glycoside hydrolase family 3 protein id=2725679 bin=GWC2_Ignavibacteria_56_12 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
glycoside hydrolase family 3 protein Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
13_1_40cm_scaffold_3876_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

20319..21800
DNA (1482bp) protein (494aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Alpha amylase catalytic region n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G7M8_CHLAD
alpha amylase catalytic region
13_1_40cm_scaffold_3876_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

22074..23585
DNA (1512bp) protein (504aa)
SSS sodium solute transporter superfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLA4_9BACT
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:EEF59307.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphae
SSS family solute/sodium (Na+) symporter
13_1_40cm_scaffold_3876_23
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

23623..23826
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V1N5_TERSS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV82316.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA
13_1_40cm_scaffold_3876_24
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(23775..26378)
DNA (2604bp) protein (868aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 3_1_23 RepID=D7K5P2_9BACE
Membrane of secreted protein {ECO:0000313|EMBL:AHG91668.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
membrane of secreted protein
13_1_40cm_scaffold_3876_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(26381..27487)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037E11BC
peptidase S45, penicillin amidase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
peptidase S45, penicillin amidase
13_1_40cm_scaffold_3876_26
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(27499..28413)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037E11BC
peptidase S45, penicillin amidase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
peptidase S45, penicillin amidase
13_1_40cm_scaffold_3876_27
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(28385..29905)
DNA (1521bp) protein (507aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000058EE3E
alpha amylase catalytic region
13_1_40cm_scaffold_3876_28
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29928..30131)
DNA (204bp) protein (68aa)
RagB/SusD domain protein n=4 Tax=Riemerella anatipestifer RepID=E4TAX1_RIEAD
ragb/susd domain protein
Ragb/susd domain protein {ECO:0000313|EMBL:AFD55237.1}; TaxID=693978 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestif
13_1_40cm_scaffold_3876_29
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(30106..31443)
DNA (1338bp) protein (446aa)
Outer membrane protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZWA3_9BACT
RagB/SusD domain-containing protein
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AHG91666.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3876_30
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(31457..33205)
DNA (1749bp) protein (583aa)
membrane protein n=1 Tax=Salisaeta longa RepID=UPI0003B38B6B
TonB-dependent outer membrane protein, SusC/RagA
TonB-dependent outer membrane protein, SusC/RagA {ECO:0000313|EMBL:AHG91667.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying 30 items

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