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13_1_40cm_scaffold_877

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_877_1
unknown

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1..162
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_40cm_scaffold_877_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(141..806)
DNA (666bp) protein (222aa)
putative peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8); K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Putative peptidyl-prolyl cis-trans isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9L1_GEMAT
SurA domain-containing protein
13_1_40cm_scaffold_877_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(1268..2812)
DNA (1545bp) protein (515aa)
putative peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8); K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] Tax=GWC2_Gemmatimonadetes_71_10_curated
Putative peptidyl-prolyl cis-trans isomerase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9L2_GEMAT
PpiC-type peptidyl-prolyl cis-trans isomerase
13_1_40cm_scaffold_877_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(2825..6118)
DNA (3294bp) protein (1098aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=861299 species="Bacteria; Ge
Transcription-repair-coupling factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9L3_GEMAT
transcription-repair coupling factor
13_1_40cm_scaffold_877_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(6118..7851)
DNA (1734bp) protein (578aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9L4_GEMAT
hypothetical membrane protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical membrane protein
13_1_40cm_scaffold_877_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(7848..8726)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9L5_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
protein of unknown function DUF58
13_1_40cm_scaffold_877_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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8849..10210
DNA (1362bp) protein (454aa)
Putative uncharacterized protein n=1 Tax=Oryza sativa subsp. japonica RepID=B9FLI1_ORYSJ
GF13555 gene product from transcript GF13555-RA Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
heat shock protein DnaJ domain-containing protein
13_1_40cm_scaffold_877_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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10303..11793
DNA (1491bp) protein (497aa)
aminopeptidase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Aminopeptidase id=3410210 bin=GWA2_Ignavibacteria_55_11 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
putative aminopeptidase
13_1_40cm_scaffold_877_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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11838..12755
DNA (918bp) protein (306aa)
transcriptional regulator n=1 Tax=Caldimonas manganoxidans RepID=UPI00037EE44B
transcriptional regulator domain-containing protein
Transcriptional regulator domain-containing protein {ECO:0000313|EMBL:AHG89496.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_877_10
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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12752..13915
DNA (1164bp) protein (388aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonel
histidine kinase (EC:2.7.13.3)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTE2_9FIRM
13_1_40cm_scaffold_877_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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13950..15059
DNA (1110bp) protein (370aa)
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:AHG89498.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_877_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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15056..16102
DNA (1047bp) protein (349aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKE4_CAUST
efflux transporter, RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AHG89500.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_877_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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16305..19070
DNA (2766bp) protein (922aa)
Cation/multidrug efflux pump n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWC8_9BACT
Acriflavin resistance protein {ECO:0000313|EMBL:AHG89501.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
acriflavin resistance protein
13_1_40cm_scaffold_877_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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19130..19465
DNA (336bp) protein (112aa)
Propeptide PepSY amd peptidase M4 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE92_9BACT
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:EEF61983.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3
13_1_40cm_scaffold_877_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(19431..20492)
DNA (1062bp) protein (354aa)
Transcription termination factor Rho n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RHO_GEMAT
transcription termination factor; K03628 transcription termination factor Rho Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
transcription termination factor
13_1_40cm_scaffold_877_16
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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20514..22313
DNA (1800bp) protein (600aa)
Elongation factor 4 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9L7_GEMAT
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
GTP-binding protein lepA
13_1_40cm_scaffold_877_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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22322..24490
DNA (2169bp) protein (723aa)
Peptidase S9 prolyl oligopeptidase active site domain protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QN89_SPILD
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:CDM65232.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylal
peptidase S9 prolyl oligopeptidase active site domain-containing protein
13_1_40cm_scaffold_877_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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24495..25493
DNA (999bp) protein (333aa)
Putative heptosyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9L8_GEMAT
glycosyl transferase family 9
Glycosyl transferase family 9 {ECO:0000313|EMBL:AHG91289.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_877_19
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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25471..26433
DNA (963bp) protein (321aa)
glk; glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Glucokinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9L9_GEMAT
ROK family protein
13_1_40cm_scaffold_877_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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26457..27353
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9M0_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
PfkB domain protein
13_1_40cm_scaffold_877_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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27350..28273
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9M1_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
hypothetical protein
13_1_40cm_scaffold_877_22
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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28270..29778
DNA (1509bp) protein (503aa)
Cystathionine beta-lyase MetC n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SPC9_9CHLR
metB; Cystathionine gamma-synthase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Cys/Met metabolism pyridoxal-phosphate-dependent protein
Displaying 22 items

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