ggKbase home page

13_1_40cm_scaffold_1153

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1153_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

2..2149
DNA (2148bp) protein (716aa)
spermine synthase; K00797 spermidine synthase [EC:2.5.1.16] Tax=GWC2_Gemmatimonadetes_71_10_curated
Spermine/spermidine synthase family protein id=3979144 bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
speE2; spermine/spermidine synthase family protein
13_1_40cm_scaffold_1153_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(2088..3953)
DNA (1866bp) protein (622aa)
putative serine/threonine protein kinase (EC:2.7.11.1); K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative serine/threonine protein kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAM0_GEMAT
protein kinase
13_1_40cm_scaffold_1153_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4160..6535
DNA (2376bp) protein (792aa)
lon; ATP-dependent Lon protease (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Lon protease n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKJ4_SINAD
ATP-dependent protease La
13_1_40cm_scaffold_1153_4
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6506..7102)
DNA (597bp) protein (199aa)
Transcriptional regulator n=1 Tax=Pseudomonas sp. G5(2012) RepID=S2FN64_9PSED
TetR family transcriptional regulator Tax=RBG_16_Gemmatimonadetes_66_8_curated
TetR family transcriptional regulator
13_1_40cm_scaffold_1153_5
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(7137..8093)
DNA (957bp) protein (319aa)
Alpha/beta hydrolase fold protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FAJ5_DESAA
Uncharacterized protein {ECO:0000313|EMBL:KGM43297.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
alpha/beta hydrolase fold protein
13_1_40cm_scaffold_1153_6
unknown

Not on your lists

comp(8090..8362)
DNA (273bp) protein (91aa)

This feature has no annotations

13_1_40cm_scaffold_1153_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(8371..9852)
DNA (1482bp) protein (494aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AAL5_GEMAT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_scaffold_1153_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10135..11553)
DNA (1419bp) protein (473aa)
Peptidase M28 n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QCN4_9CYAN
Predicted aminopeptidase {ECO:0000313|EMBL:CDM65305.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
peptidase M28
13_1_40cm_scaffold_1153_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(11550..12446)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GLR4_SORC5
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical protein
13_1_40cm_scaffold_1153_10
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

12472..14469
DNA (1998bp) protein (666aa)
leuC2; 3-isopropylmalate dehydratase (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RBG_16_Acidobacteria_68_9_curated
leuC2; 3-isopropylmalate dehydratase (EC:4.2.1.33)
3-isopropylmalate dehydratase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G0G3_SORC5
13_1_40cm_scaffold_1153_11
unknown

Not on your lists

comp(14461..15183)
DNA (723bp) protein (241aa)

This feature has no annotations

13_1_40cm_scaffold_1153_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15200..16327)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIH8_9FIRM
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative glycosyl hydrolase domain DUF4015
13_1_40cm_scaffold_1153_13
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16379..18724)
DNA (2346bp) protein (782aa)
Peptidase M14, carboxypeptidase A n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028C7_SOLUE
peptidase M14, carboxypeptidase A Tax=GWC2_Gemmatimonadetes_71_10_curated
peptidase M14 carboxypeptidase A
13_1_40cm_scaffold_1153_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(18748..20832)
DNA (2085bp) protein (695aa)
Putative S9C family peptidase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A855_GEMAT
putative S9C family peptidase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative S9C family peptidase
13_1_40cm_scaffold_1153_15
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20947..22644)
DNA (1698bp) protein (566aa)
OmpA domain protein n=1 Tax=Bacteroidetes oral taxon 274 str. F0058 RepID=D7JEY0_9BACT
OmpA/MotB domain-containing protein
OmpA/MotB domain protein {ECO:0000313|EMBL:ADQ79559.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludi
13_1_40cm_scaffold_1153_16
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22659..24104)
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI00037D0457
OmpA family protein
Uncharacterized protein {ECO:0000313|EMBL:EIT69819.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboni
13_1_40cm_scaffold_1153_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(24210..26333)
DNA (2124bp) protein (708aa)
hypothetical protein n=1 Tax=Paenibacillus massiliensis RepID=UPI000371B361
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
mcp44H; methyl-accepting chemotaxis sensory transducer, class 44H
13_1_40cm_scaffold_1153_18
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

26632..27120
DNA (489bp) protein (163aa)
6-phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11] Tax=GWC2_Gemmatimonadetes_71_10_curated
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase id=2200499 bin=GWB2_Elusimicrobia_63_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWB2_Elusimicrobia_63_16 organism_group=Elusimicrobia
13_1_40cm_scaffold_1153_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

27198..27581
DNA (384bp) protein (128aa)
6-phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NM40_ROSCS
13_1_40cm_scaffold_1153_20
unknown

Not on your lists

27717..28001
DNA (285bp) protein (95aa)

This feature has no annotations

13_1_40cm_scaffold_1153_21

Not on your lists

28077..30635
DNA (2559bp) protein (853aa)
Putative helicase n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR3_9BACT
Putative helicase {ECO:0000313|EMBL:AAY89249.1}; TaxID=333371 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC-L1N9.;"
helicase, DEAD/DEAH family
13_1_40cm_scaffold_1153_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(30632..31123)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL22 RepID=U9GY91_PSEAI
Transcriptional regulator, TetR family
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_1153_23

Not on your lists

31293..31721
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BAC-L1N9 RepID=Q4JIR5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHN97945.1}; TaxID=1447241 species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
13_1_40cm_scaffold_1153_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

31742..32224
DNA (483bp) protein (161aa)
hypothetical protein; K12073 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] Tax=RBG_16_Gemmatimonadetes_66_8_curated
Putative Pol-Pal system-associated acyl-CoA thioesterase n=1 Tax=mine drainage metagenome RepID=E6PEA1_9ZZZZ
thioesterase superfamily protein
Displaying 24 items

View Taxonomy