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13_1_40cm_scaffold_3760

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3760_1
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

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3..503
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein id=17028651 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein Tax=RBG_16_Aminicenantes_66_30_curated
13_1_40cm_scaffold_3760_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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514..3969
-----------------
DNA (3456bp)
protein (1152aa)
Putative glycosyl transferase/polysaccharide deacetylase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ACF6_GEMAT
Polysaccharide deacetylase {ECO:0000313|EMBL:AHG87644.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
polysaccharide deacetylase
13_1_40cm_scaffold_3760_3
unknown

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4027..4962
-----------------
DNA (936bp)
protein (312aa)

This feature has no annotations

13_1_40cm_scaffold_3760_4
unknown

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comp(4823..5515)
-----------------
DNA (693bp)
protein (231aa)

This feature has no annotations

13_1_40cm_scaffold_3760_5
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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5682..5930
-----------------
DNA (249bp)
protein (83aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_scaffold_3760_6
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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5941..7461
-----------------
DNA (1521bp)
protein (507aa)
hypothetical protein Tax=RBG_16_Gammaproteobacteria_66_13_curated
13_1_40cm_scaffold_3760_7
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

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7458..8756
-----------------
DNA (1299bp)
protein (433aa)
Serine/threonine protein kinase with TPR repeats n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IP04_KORVE
TPR repeat-containing serine/threonin protein kinase Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
serine/threonin protein kinase
13_1_40cm_scaffold_3760_8
unknown

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comp(8741..9463)
-----------------
DNA (723bp)
protein (241aa)

This feature has no annotations

13_1_40cm_scaffold_3760_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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9549..10226
-----------------
DNA (678bp)
protein (226aa)
OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEF7_GEMAT
transcriptional regulator domain-containing protein
Transcriptional regulator domain-containing protein {ECO:0000313|EMBL:AHG89496.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3760_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10223..11482
-----------------
DNA (1260bp)
protein (420aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Histidine kinase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1S0_SPHTD
ATP-binding region ATPase domain protein
13_1_40cm_scaffold_3760_11
unknown

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comp(11479..11754)
-----------------
DNA (276bp)
protein (92aa)

This feature has no annotations

13_1_40cm_scaffold_3760_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(11867..13756)
-----------------
DNA (1890bp)
protein (630aa)
Cation/multidrug efflux pump n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWC8_9BACT
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:AHG89501.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3760_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(13756..14754)
-----------------
DNA (999bp)
protein (333aa)
Acriflavin resistance protein n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2JBH6_NOSP7
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:AHG89501.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3760_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(14751..15170)
-----------------
DNA (420bp)
protein (140aa)
RND family efflux transporter, MFP subunit n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZGZ5_TERRK
efflux transporter, RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AHG89500.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3760_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15109..15738)
-----------------
DNA (630bp)
protein (210aa)
RND transporter n=1 Tax=Asticcacaulis sp. AC402 RepID=V4MXE0_9CAUL
putative RND efflux transporter, MFP subunit Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
acrA; Membrane-fusion protein
13_1_40cm_scaffold_3760_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(15735..16832)
-----------------
DNA (1098bp)
protein (366aa)
Metal ion efflux outer membrane factor protein family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9T0_PHEZH
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:AHG89498.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3760_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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16964..17197
-----------------
DNA (234bp)
protein (78aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PEK5_9DELT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90551.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3760_trna_1
unknown

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17370..17451
-----------------
DNA (82bp)
transferRNA
13_1_40cm_scaffold_3760_18
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

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17468..17989
-----------------
DNA (522bp)
protein (174aa)
Putative uncharacterized protein id=4338489 bin=GWC2_Chloroflexi_49_37 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
hypothetical protein Tax=GWC2_Chloroflexi_49_37_curated
Predicted membrane protein
13_1_40cm_scaffold_3760_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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18062..19105
-----------------
DNA (1044bp)
protein (348aa)
LacI family transcriptional regulator n=2 Tax=Rhodanobacter RepID=I4WNC0_9GAMM id=5223544 bin=16ft_combo_ws3_JS1 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
transcriptional regulator Tax=RBG_16_RIF_WS3X_71_46_curated
LacI family transcriptional regulator
13_1_40cm_scaffold_3760_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19102..22122
-----------------
DNA (3021bp)
protein (1007aa)
OmpA-related protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QH43_9DELT
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:AHG89209.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_3760_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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22197..23612
-----------------
DNA (1416bp)
protein (472aa)
hypothetical protein id=24457720 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
Protein of unknown function DUF2329
Displaying 22 items

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