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13_1_40cm_scaffold_385

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_385_1
unknown

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415..942
DNA (528bp) protein (176aa)

This feature has no annotations

13_1_40cm_scaffold_385_2
RIFOXYC2_FULL_OP11_Collierbacteria_43_15_curated, Collierbacteria, Microgenomates, Bacteria

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comp(1074..1361)
DNA (288bp) protein (96aa)
Cna B domain protein Tax=RIFOXYC2_FULL_OP11_Collierbacteria_43_15_curated
13_1_40cm_scaffold_385_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1871..3487)
DNA (1617bp) protein (539aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG89857.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_385_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3492..4676)
DNA (1185bp) protein (395aa)
UPF0272 protein Moth_2512 n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Y2512_MOOTA id=5223158 bin=16ft_combo_ws3_JS1 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
UPF0272 protein
UPF0272 protein J421_3233 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_385_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4702..5886)
DNA (1185bp) protein (395aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
putative threonine synthase; K01733 threonine synthase [EC:4.2.3.1] id=24499170 bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Pyridoxal-5'-phosphate-dependent protein beta subunit
13_1_40cm_scaffold_385_6
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(5883..7694)
DNA (1812bp) protein (604aa)
UvrABC system protein C n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=UVRC_GEMAT
uvrC; UvrABC system protein C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
uvrC; UvrABC system protein C
13_1_40cm_scaffold_385_7
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

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comp(7676..9256)
DNA (1581bp) protein (527aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YHS9_9DELT
mviN; virulence factor MviN-like protein; K03980 virulence factor Tax=RBG_16_Spirochaetes_49_21_curated
integral membrane protein MviN
13_1_40cm_scaffold_385_8
uncultured actinobacterium HF0500_01C15, Actinobacteria, Actinobacteria, Bacteria

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comp(9259..9537)
DNA (279bp) protein (93aa)
Putative uncharacterized protein {ECO:0000313|EMBL:ADI22314.1}; TaxID=723603 species="Bacteria; Actinobacteria; marine Actinobacteria clade; environmental samples.;" source="uncultured actinobacterium
13_1_40cm_scaffold_385_9
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9548..10918)
DNA (1371bp) protein (457aa)
UPF0747 protein n=2 Tax=Bacteria RepID=E7C456_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function UCP012535
13_1_40cm_scaffold_385_10
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(10935..11414)
DNA (480bp) protein (160aa)
Protein HLRTI_002811 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PL94_9EURY
AMMECR1 domain protein
Protein HLRTI_002811 {ECO:0000256|HAMAP-Rule:MF_00645}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea SARL
13_1_40cm_scaffold_385_11
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11476..11655)
DNA (180bp) protein (60aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rR
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Spiribacter salinus M19-40 RepID=R4V988_9GAMM
rRNA large subunit methyltransferase
13_1_40cm_scaffold_385_12
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11834..12466)
DNA (633bp) protein (211aa)
glutamate dehydrogenase; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
Glutamate dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S6_GEMAT
Glu/Leu/Phe/Val dehydrogenase
13_1_40cm_scaffold_385_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(12457..13062)
DNA (606bp) protein (202aa)
Glutamate dehydrogenase (NAD(P)+) oxidoreductase protein n=1 Tax=mine drainage metagenome RepID=E6PZR9_9ZZZZ
Glu/Leu/Phe/Val dehydrogenase
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_scaffold_385_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(13088..14128)
DNA (1041bp) protein (347aa)
lpxK; tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Tetraacyldisaccharide 4'-kinase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S5_GEMAT
Tetraacyldisaccharide 4'-kinase
13_1_40cm_scaffold_385_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(14125..14751)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MLL6_9BACT
hypothetical protein; K09778 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF374
13_1_40cm_scaffold_385_16
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(14748..15863)
DNA (1116bp) protein (372aa)
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182] Tax=GWC2_Gemmatimonadetes_71_10_curated
lpxB; lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S3_GEMAT
13_1_40cm_scaffold_385_17
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15860..16831)
DNA (972bp) protein (324aa)
Putative oxidoreductase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S2_GEMAT
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAH38632.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_scaffold_385_18
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16834..17601)
DNA (768bp) protein (256aa)
lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase {ECO:0000256|SAAS:SAAS00064156}; EC=2.3.1.129 {ECO:0000256|SAAS:SAAS00001267};; TaxID=379066 species="Bacteria; Gemmatimonadetes;
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S1_GEMAT
13_1_40cm_scaffold_385_19
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(17598..18884)
DNA (1287bp) protein (429aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|SAAS:SAAS00064869}; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00041386};; EC=4.2.1.59 {ECO:0000256|SAAS:SAAS00064862};; UDP-3-O-[3-hydroxymyri
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8S0_GEMAT
(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
13_1_40cm_scaffold_385_20
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(18877..19929)
DNA (1053bp) protein (351aa)
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC:2.3.1.-); K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] Tax=GWC2_Gemmatimonadetes_71_10_curated
UDP-3-O-acylglucosamine N-acyltransferase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R9_GEMAT
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
13_1_40cm_scaffold_385_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(19944..20513)
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=2 Tax=Bacteria RepID=E7C483_9BACT
outer membrane chaperone Skp (OmpH) family protein; K06142 outer membrane protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
outer membrane chaperone Skp (OmpH)
13_1_40cm_scaffold_385_22
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(20537..22777)
DNA (2241bp) protein (747aa)
Bacterial surface antigen (D15) family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R7_GEMAT
surface antigen; K07277 outer membrane protein Tax=GWC2_Gemmatimonadetes_71_10_curated
outer membrane protein assembly complex, YaeT protein
13_1_40cm_scaffold_385_23
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(22939..25419)
DNA (2481bp) protein (827aa)
ATP-dependent Clp protease ATP-binding subunit ClpC n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8R6_GEMAT
clpC; ATP-dependent Clp protease ATP-binding subunit ClpC; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ATPase AAA-2 domain protein
13_1_40cm_scaffold_385_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(25441..26514)
DNA (1074bp) protein (358aa)
hypothetical protein; K00936 [EC:2.7.3.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ATP:guanido phosphotransferase n=1 Tax=uncultured bacterium W5-51b RepID=H9BX57_9BACT
hypothetical protein
13_1_40cm_scaffold_385_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(26511..27008)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium W5-51b RepID=H9BX58_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
hypothetical protein
13_1_40cm_scaffold_385_26
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(27008..27709)
DNA (702bp) protein (234aa)
lolD; lipoprotein releasing system ATP-binding protein LolD; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=uncultured bacterium W5-51b RepID=H9BX59_9BACT
ABC transporter related protein
13_1_40cm_scaffold_385_27
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(27706..29037)
DNA (1332bp) protein (444aa)
ABC-type transport system protein n=1 Tax=uncultured bacterium W5-51b RepID=H9BX60_9BACT
lolC; lipoprotein releasing system transmembrane protein LolC; K09808 lipoprotein-releasing system permease protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
MacB-like periplasmic core domain protein
13_1_40cm_scaffold_385_28

Not on your lists

comp(29034..29450)
DNA (417bp) protein (139aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
Lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=uncultured bacterium W5-51b RepID=H9BX61_9BACT
Displaying 28 items

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