ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

13_1_40cm_scaffold_17821_8

Organism: 13_1_40CM_Gemmatimonadetes_70_11

partial RP 14 / 55 MC: 2 BSCG 16 / 51 MC: 3 ASCG 7 / 38
Location: comp(6507..7127)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5Q9_GEMAT similarity UNIREF
DB: UNIREF100
  • Identity: 47.1
  • Coverage: 187.0
  • Bit_score: 143
  • Evalue 3.30e-31
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 65.2
  • Coverage: 184.0
  • Bit_score: 217
  • Evalue 2.50e-53
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 44.2
  • Coverage: 206.0
  • Bit_score: 145
  • Evalue 1.90e-32

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_Gemmatimonadetes_68_9 → Gemmatimonadetes → Bacteria

Sequences

DNA sequence
Length: 621
ATGCGGACTGATCCGCCGTCCCAACTCCCTGGCGGGGTTGCGCGTATACCACAGGGAGACGAGGCCGAGCTGGCGGCGCGGGCGCGCGCCGGGGACCGGGCGGCCTTCGGGACCTTGGTGGAACGCTTCGCCCCGCAGGCCCGGCGGGTCGCGCGGGCCGTACTGCAAAATCCTGACGACGCAGACGACGCCGCGCAGGACGCCTTCCTCTCGGCGCTGGTCAAACTGGACCAGTACGACCCCCGCCGCCCCTTCGGCCCCTGGTTGATGCGGATCGTGGCCAACGCCGCGACGGATCGCCGGCGGCGGCGCGCGGTGCGCCAGACGGAGCCGTTGGCGCCGGAGCTCGCGACCGGGAGAGAGGGGGGCTGGGGGGCGGGGGGGGCCTCGCGCCCCAACCACGAGGCCGAGCGGCGCGCGTTGGGCGAACGGCTGCGGCTCGCGTTGGCGCAGCTGCCGGAACGCCGGCGCATGGCGGTGGTGTTGTTCGACGTGGAGGGCTATTCCCACGCCGAGATCGCCGCCATCCTCGGGATCCCCGAGGGCACGGCGCGCTCGGAAGTCTTCCACGCTCGGCGCGCGCTGCGCGCCCTGTTGCAGGACTGGAAAGAGGAGGGATGA
PROTEIN sequence
Length: 207
MRTDPPSQLPGGVARIPQGDEAELAARARAGDRAAFGTLVERFAPQARRVARAVLQNPDDADDAAQDAFLSALVKLDQYDPRRPFGPWLMRIVANAATDRRRRRAVRQTEPLAPELATGREGGWGAGGASRPNHEAERRALGERLRLALAQLPERRRMAVVLFDVEGYSHAEIAAILGIPEGTARSEVFHARRALRALLQDWKEEG*