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13_1_40cm_scaffold_1543

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1543_1
unknown

Not on your lists

3..542
DNA (540bp) protein (180aa)

This feature has no annotations

13_1_40cm_scaffold_1543_2
unknown

Not on your lists

696..983
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_scaffold_1543_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1016..2155)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B6F40B
Appr-1-p processing domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Appr-1-p processing domain-containing protein
13_1_40cm_scaffold_1543_4
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(2164..2892)
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Pseudomonas sp. R81 RepID=UPI00029A18D5
hypothetical protein Tax=RBG_13_Planctomycetes_60_9_curated
hypothetical protein
13_1_40cm_scaffold_1543_5
unknown

Not on your lists

2954..3472
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_40cm_scaffold_1543_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3699..4982)
DNA (1284bp) protein (428aa)
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] id=12554765 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
seryl-tRNA synthetase
13_1_40cm_scaffold_1543_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

5104..5916
DNA (813bp) protein (271aa)
UDP-glucose pyrophosphorylase (EC:2.7.7.9); K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
UDP-glucose pyrophosphorylase (EC:2.7.7.9); K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] id=12554764 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
13_1_40cm_scaffold_1543_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(5876..6289)
DNA (414bp) protein (138aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
type I antifreeze protein
type I antifreeze protein id=16838236 bin=RBG_16_Aminicenantes_66_30 tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
13_1_40cm_scaffold_1543_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6264..8129)
DNA (1866bp) protein (622aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SVD0_9DELT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_scaffold_1543_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9075..9596
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI0003706E5D
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_scaffold_1543_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9763..11136
DNA (1374bp) protein (458aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] id=12554761 bin=CNBR_ACIDO species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
13_1_40cm_scaffold_1543_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11138..12982
DNA (1845bp) protein (615aa)
glutamine--fructose-6-phosphate transaminase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16) id=12554760 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glutamine--fructose-6-phosphate transaminase
13_1_40cm_scaffold_1543_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

12988..15264
DNA (2277bp) protein (759aa)
ATP-dependent DNA helicase PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.4.12) id=12554754 bin=CNBR_ACIDO species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP-dependent DNA helicase PcrA
13_1_40cm_scaffold_1543_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15296..15799
DNA (504bp) protein (168aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_1543_15
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(15759..16493)
DNA (735bp) protein (245aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
13_1_40cm_scaffold_1543_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


comp(16508..18988)
DNA (2481bp) protein (827aa)
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] id=12554753 bin=CNBR_ACIDO species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA gyrase subunit A (EC:5.99.1.3)
13_1_40cm_scaffold_1543_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(18988..21570)
DNA (2583bp) protein (861aa)
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] id=12554752 bin=CNBR_ACIDO species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA gyrase subunit B
13_1_40cm_scaffold_1543_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(21567..22697)
DNA (1131bp) protein (377aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
DNA polymerase III, beta subunit; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=12554751 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA polymerase III subunit beta (EC:2.7.7.7)
13_1_40cm_scaffold_1543_19
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(22958..24292)
DNA (1335bp) protein (445aa)
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein id=12554750 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
chromosomal replication initiator protein DnaA
13_1_40cm_scaffold_1543_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

25252..26988
DNA (1737bp) protein (579aa)
protein translocase subunit yidC; K03217 preprotein translocase subunit YidC Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
YidC/Oxa1 family membrane protein insertase; K03217 preprotein translocase subunit YidC id=12554746 bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein translocase subunit yidC
13_1_40cm_scaffold_1543_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

26995..27459
DNA (465bp) protein (155aa)
single-stranded nucleic acid binding R3H domain-containing protein; K06346 spoIIIJ-associated protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
putative RNA-binding protein id=12554745 bin=CNBR_ACIDO species=Desulfosporosinus acidiphilus genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNA-binding protein
13_1_40cm_scaffold_1543_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

27490..28752
DNA (1263bp) protein (421aa)
tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] id=12554744 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tRNA modification GTPase TrmE
Displaying 22 items

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