ggKbase home page

13_1_40cm_scaffold_207

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_207_1
unknown

Not on your lists

comp(3..68)
DNA (66bp) protein (22aa)

This feature has no annotations

13_1_40cm_scaffold_207_2
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(71..1192)
DNA (1122bp) protein (374aa)
Potassium-transporting ATPase A chain {ECO:0000255|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000255|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000255|HAMAP-Rule:M
Potassium-transporting ATPase A chain n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=ATKA_KORVE
potassium-transporting ATPase subunit A
13_1_40cm_scaffold_207_3
unknown

Not on your lists

comp(1329..1418)
DNA (90bp) protein (30aa)

This feature has no annotations

13_1_40cm_scaffold_207_4
unknown

Not on your lists

comp(1415..1513)
DNA (99bp) protein (33aa)

This feature has no annotations

13_1_40cm_scaffold_207_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(1521..3053)
DNA (1533bp) protein (511aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8U0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43922.1}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
13_1_40cm_scaffold_207_6
unknown

Not on your lists

comp(3113..3247)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_scaffold_207_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3418..5640)
DNA (2223bp) protein (741aa)
Amino acid transporters n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XN7_SOLUE
amino acid transporter Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
amino acid transporter
13_1_40cm_scaffold_207_8
unknown

Not on your lists

5717..6043
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_scaffold_207_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6177..9602)
DNA (3426bp) protein (1142aa)
Mg2+ transporter MgtE n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DL62_SINAD
Magnesium transporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Mg2+ transporter MgtE
13_1_40cm_scaffold_207_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9688..10398)
DNA (711bp) protein (237aa)
Response regulator receiver n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HY28_AZOC5
response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain); K07667 two-component system, OmpR family, KDP operon response regulator KdpE Tax=RIFCSPLOWO2_02_FULL_Acidobacter
response regulator receiver
13_1_40cm_scaffold_207_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10395..11918)
DNA (1524bp) protein (508aa)
integral membrane sensor signal transduction histidine kinase; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035E85A5
integral membrane sensor signal transduction histidine kinase
13_1_40cm_scaffold_207_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11923..13761)
DNA (1839bp) protein (613aa)
Amino acid permease-associated region n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NGU4_ROSCS
amino acid permease-associated protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
amino acid permease
13_1_40cm_scaffold_207_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(13933..15390)
DNA (1458bp) protein (486aa)
small GTP-binding protein; K03977 GTP-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
engA; GTP-binding protein EngA; K03977 GTP-binding protein id=14628906 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin8_Chloro organism_group=Chloroflexi
ribosome-associated GTPase EngA
13_1_40cm_scaffold_207_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

15473..15742
DNA (270bp) protein (90aa)
nucleoid DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta id=12556952 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleoid DNA-binding protein
13_1_40cm_scaffold_207_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15913..16818
DNA (906bp) protein (302aa)
peptidase M50 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
peptidase M50 family protein id=12556951 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase M50 family protein
13_1_40cm_scaffold_207_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16900..19227)
DNA (2328bp) protein (776aa)
PriA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] id=12556950 bin=CNBR_ACIDO species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PriA; primosomal protein N'
13_1_40cm_scaffold_207_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(19193..20008)
DNA (816bp) protein (272aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] id=12556949 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phage SPO1 DNA polymerase-like protein
13_1_40cm_scaffold_207_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(19965..21191)
DNA (1227bp) protein (409aa)
phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase; K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] Tax=RIFCS
phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase; K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] id=12556948 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
13_1_40cm_scaffold_207_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(21280..21579)
DNA (300bp) protein (100aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_207_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(21636..22256)
DNA (621bp) protein (207aa)
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] id=12556946 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
guanylate kinase (EC:2.7.4.8)
13_1_40cm_scaffold_207_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(22246..22995)
DNA (750bp) protein (250aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12556945 bin=CNBR_ACIDO species=Paenibacillus ginsengihumi genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
yicC; stationary phase survival protein
13_1_40cm_scaffold_207_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(23253..25019)
DNA (1767bp) protein (589aa)
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
phospholipid-lipopolysaccharide ABC transporter; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] id=12556944 bin=CNBR_ACIDO species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phospholipid-lipopolysaccharide ABC transporter
13_1_40cm_scaffold_207_23
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(25200..26174)
DNA (975bp) protein (325aa)
UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
UDP-glucose-4-epimerase id=12556943 bin=CNBR_ACIDO species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP-glucose 4-epimerase
13_1_40cm_scaffold_207_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(26191..27492)
DNA (1302bp) protein (434aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] id=12556942 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rkpK; UDP-glucose 6-dehydrogenase
13_1_40cm_scaffold_207_25
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

27898..29031
DNA (1134bp) protein (378aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 glycosyl transferase id=12556941 bin=CNBR_ACIDO species=Acidimicrobium ferrooxidans genus=Acidimicrobium taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
group 1 glycosyl transferase
13_1_40cm_scaffold_207_26
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

29015..30175
DNA (1161bp) protein (387aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 glycosyl transferase id=12556940 bin=CNBR_ACIDO species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
AprM
13_1_40cm_scaffold_207_27
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

30172..30957
DNA (786bp) protein (262aa)
family 2 glycosyl transferase; K07011 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
glycosyl transferase family protein; K07011 id=12556939 bin=CNBR_ACIDO species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glycosyl transferase family protein
13_1_40cm_scaffold_207_28
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

31170..32615
DNA (1446bp) protein (482aa)
HtrA2 peptidase (EC:3.4.21.108) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
degP; periplasmic protease (EC:3.4.21.-)
Peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NYE7_9BACT
13_1_40cm_scaffold_207_29
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

32689..33867
DNA (1179bp) protein (393aa)
glycosyl transferase, group 1 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
glycosyl transferase, group 1 id=12556938 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
group 1 glycosyl transferase
13_1_40cm_scaffold_207_30
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

33951..35057
DNA (1107bp) protein (369aa)
putative glycosyl transferase, group 1 (EC:2.4.-.-) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 glycosyl transferase id=12556937 bin=CNBR_ACIDO species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
group 1 glycosyl transferase
Displaying items 1-30 of 46 in total

View Taxonomy