ggKbase home page

13_1_40cm_scaffold_2556

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2556_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..346)
DNA (345bp) protein (115aa)
putative yegS-like lipid kinase (EC:2.7.1.-)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI000378027D
diacylglycerol kinase catalytic protein; K07029 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_scaffold_2556_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(396..914)
DNA (519bp) protein (173aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_2556_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

1242..1898
DNA (657bp) protein (219aa)
3-deoxy-manno-octulosonate cytidylyltransferase; K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] id=12555283 bin=CNBR_ACIDO species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase
13_1_40cm_scaffold_2556_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

1907..3565
DNA (1659bp) protein (553aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
pyrG; CTP synthetase; K01937 CTP synthase [EC:6.3.4.2] id=12555284 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pyrG; CTP synthetase
13_1_40cm_scaffold_2556_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

3604..4452
DNA (849bp) protein (283aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] id=12555285 bin=CNBR_ACIDO species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
2-dehydro-3-deoxyphosphooctonate aldolase
13_1_40cm_scaffold_2556_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

4445..5440
DNA (996bp) protein (332aa)
KpsF/GutQ; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) id=12555286 bin=CNBR_ACIDO species=Alcanivorax pacificus genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
KpsF/GutQ family protein
13_1_40cm_scaffold_2556_7
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

5421..6113
DNA (693bp) protein (231aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curate
kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45) id=12555287 bin=CNBR_ACIDO species=Sutterella wadsworthensis genus=Sutterella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
13_1_40cm_scaffold_2556_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

6110..7327
DNA (1218bp) protein (406aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12555288 bin=CNBR_ACIDO species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_2556_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7339..7887)
DNA (549bp) protein (183aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9) id=12555289 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
dephospho-CoA kinase (EC:2.7.1.24)
13_1_40cm_scaffold_2556_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8068..8415)
DNA (348bp) protein (116aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=RIFCSPLOWO2_02_FULL_Acid
Bifunctional protein FolD n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=FOLD_KORVE
methenyltetrahydrofolate cyclohydrolase
Displaying 10 items

View Taxonomy