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13_1_40cm_scaffold_35

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_35_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1..657)
DNA (657bp) protein (219aa)
Putative metal-dependent phosphohydrolase n=1 Tax=uncultured Acidobacteria bacterium cosmid p2H8 RepID=B1NME4_9BACT
diguanylate cyclase (GGDEF) domain Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_scaffold_35_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(762..2441)
DNA (1680bp) protein (560aa)
peptidase S8 and S53 subtilisin kexin sedolisin Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
subtilisin-like serine protease id=12555736 bin=CNBR_ACIDO species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
alkaline serine protease
13_1_40cm_scaffold_35_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2464..2724)
DNA (261bp) protein (87aa)
peptidase S8 and S53 subtilisin kexin sedolisin Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_35_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3008..4732
DNA (1725bp) protein (575aa)
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ddpA; peptide ABC transporter peripolasmic protein; K02035 peptide/nickel transport system substrate-binding protein id=12555398 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
extracellular solute-binding protein
13_1_40cm_scaffold_35_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

4761..5711
DNA (951bp) protein (317aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021F8_SOLUE
binding-protein-dependent transporter inner membrane component; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
binding-protein-dependent transporter inner membrane component
13_1_40cm_scaffold_35_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

5698..6732
DNA (1035bp) protein (345aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Sulfurihydrogenibium RepID=B2V5V3_SULSY
dipeptide transporter permease DppC; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
binding-protein-dependent transport systems inner membrane component
13_1_40cm_scaffold_35_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6680..7579
DNA (900bp) protein (300aa)
dihydrodipicolinate synthase/N-acetylneuraminate lyase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
HOGA1, C10orf65; 4-hydroxy-2-oxoglutarate aldolase 1 id=24519537 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gallus gallus genus=Gallus taxon_order=Galliformes taxon_class=Aves phylum=Chordata tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
dihydrodipicolinate synthase/N-acetylneuraminate lyase
13_1_40cm_scaffold_35_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

7893..9242
DNA (1350bp) protein (450aa)
peptidase M48 Ste24p Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
peptidase M48 Ste24p id=12555738 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase M48
13_1_40cm_scaffold_35_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

9239..9997
DNA (759bp) protein (253aa)
monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase; K03814 monofunctional biosynthetic peptidoglycan transglycosylase [EC:2.4.1.-] id=12555739 bin=CNBR_ACIDO species=unknown genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
monofunctional biosynthetic peptidoglycan transglycosylase (EC:2.4.2.-)
13_1_40cm_scaffold_35_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

10210..11034
DNA (825bp) protein (275aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_scaffold_35_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11058..11594)
DNA (537bp) protein (179aa)
cell wall-associated hydrolase, invasion-associated protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12555740 bin=CNBR_ACIDO species=Pandoraea pnomenusa genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
NlpC/P60 family protein
13_1_40cm_scaffold_35_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11748..12281
DNA (534bp) protein (178aa)
putative HNH endonuclease (EC:3.1.-.-) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
putative HNH endonuclease (EC:3.1.-.-) id=12555741 bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
putative HNH endonuclease (EC:3.1.-.-)
13_1_40cm_scaffold_35_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12361..13356
DNA (996bp) protein (332aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein id=12555742 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_35_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

13435..14922
DNA (1488bp) protein (496aa)
Putative permease n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A971_GEMAT
putative permease Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
putative permease
13_1_40cm_scaffold_35_15
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14978..16060
DNA (1083bp) protein (361aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAJ2_ANADF
L-carnitine dehydratase/bile acid-inducible protein F
Alpha-methylacyl-CoA racemase {ECO:0000313|EMBL:GAO01240.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobact
13_1_40cm_scaffold_35_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(16087..16917)
DNA (831bp) protein (277aa)
type 11 methyltransferase id=14429635 bin=bin3_NC10 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
type 11 methyltransferase Tax=CSP1_5_NC10
type 11 methyltransferase
13_1_40cm_scaffold_35_17
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

17008..19950
DNA (2943bp) protein (981aa)
hypothetical protein; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A id=12555743 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
uvrA; excinuclease ABC subunit A
13_1_40cm_scaffold_35_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

20286..21095
DNA (810bp) protein (270aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curat
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-); K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] id=12555744 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
13_1_40cm_scaffold_35_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

21302..21796
DNA (495bp) protein (165aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_scaffold_35_20
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22030..22680
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003667D48
methyltransferase Tax=RBG_16_Deltaproteobacteria_48_10_curated
methyltransferase
13_1_40cm_scaffold_35_21
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(22786..24096)
DNA (1311bp) protein (437aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Radical SAM domain protein id=2892300 bin=GWC1_Spirochaetes_27_15 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC1_Spirochaetes_27_15 organism_group=Spirochaetes
hypothetical protein
13_1_40cm_scaffold_35_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(24157..24423)
DNA (267bp) protein (89aa)
id=12555745 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
id=12555745 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_35_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(24576..24917)
DNA (342bp) protein (114aa)
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
anti-sigma-factor antagonist; K04749 anti-sigma B factor antagonist id=12555746 bin=CNBR_ACIDO species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
anti-anti-sigma factor family protein
13_1_40cm_scaffold_35_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(24917..25552)
DNA (636bp) protein (212aa)
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
ECF subfamily RNA polymerase sigma-24 factor id=12555747 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-70 family RNA polymerase sigma factor
13_1_40cm_scaffold_35_25
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

25580..26830
DNA (1251bp) protein (417aa)
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] id=12555748 bin=CNBR_ACIDO species=Roseomonas sp. B5 genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diaminopimelate decarboxylase (EC:4.1.1.20)
13_1_40cm_scaffold_35_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

26830..27423
DNA (594bp) protein (198aa)
tmk; dTMP kinase (EC:2.7.4.9)
thymidylate kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
thymidylate kinase id=12555749 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_35_27
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(27389..28153)
DNA (765bp) protein (255aa)
putative phosphoribosyl transferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
comF; competence protein F id=12555750 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoribosyltransferase
13_1_40cm_scaffold_35_28
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(28140..29078)
DNA (939bp) protein (313aa)
Sigma-54 interaction domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIK9_CHLTF
sigma-54 dependent trancsriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
sigma-54 interaction domain-containing protein
13_1_40cm_scaffold_35_29
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(29192..29572)
DNA (381bp) protein (127aa)
Iojap-related protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
iojap superfamily protein; K09710 ribosome-associated protein id=12555751 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Iojap-related protein
13_1_40cm_scaffold_35_30
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(29559..30185)
DNA (627bp) protein (209aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase; K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] id=12555752 bin=CNBR_ACIDO species=Pseudomonas mendocina genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Displaying items 1-30 of 41 in total

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