ggKbase home page

13_1_40cm_scaffold_3850

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_3850_1
unknown

Not on your lists

2..448
DNA (447bp) protein (149aa)

This feature has no annotations

13_1_40cm_scaffold_3850_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

448..1209
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VTN5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90576.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
13_1_40cm_scaffold_3850_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(1291..2313)
DNA (1023bp) protein (341aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins id=12555485 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rod shape-determining protein MreB
13_1_40cm_scaffold_3850_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(2672..5221)
DNA (2550bp) protein (850aa)
Gll1201 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NLC5_GLOVI
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein
13_1_40cm_scaffold_3850_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(5471..5824)
DNA (354bp) protein (118aa)
Transcriptional regulator, PadR family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XX9_SOLUE
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:ABJ85486.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Sol
13_1_40cm_scaffold_3850_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6088..7197
DNA (1110bp) protein (370aa)
Putative transport protein n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X365_9BACT
secretion protein HlyD Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
secretion protein HlyD
13_1_40cm_scaffold_3850_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

7199..10300
DNA (3102bp) protein (1034aa)
Putative multidrug resistance pump n=1 Tax=uncultured Acidobacteria bacterium RepID=Q7X364_9BACT
hydrophobe/amphiphile efflux-1 HAE1; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hydrophobe/amphiphile efflux protein
13_1_40cm_scaffold_3850_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

10287..11849
DNA (1563bp) protein (521aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
outer membrane efflux protein domain-containing protein id=12555110 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
outer membrane efflux protein domain-containing protein
13_1_40cm_scaffold_3850_9
unknown

Not on your lists

comp(12122..12400)
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_scaffold_3850_10
unknown

Not on your lists

comp(12601..12816)
DNA (216bp) protein (72aa)

This feature has no annotations

13_1_40cm_scaffold_3850_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

12975..13622
DNA (648bp) protein (216aa)
Putative uncharacterized protein n=1 Tax=Angiococcus disciformis RepID=Q5ZP99_9DELT
transposase IS66 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
transposase IS66
13_1_40cm_scaffold_3850_12
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

13643..14254
DNA (612bp) protein (204aa)
Methyltransferase type 11 n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HPE8_CYAP4
Methyltransferase type 11 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
type 11 methyltransferase
13_1_40cm_scaffold_3850_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

14458..15426
DNA (969bp) protein (323aa)
alcohol dehydrogenase GroES-like protein; K13953 alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Alcohol dehydrogenase GroES-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZZ1_RUBXD
alcohol dehydrogenase GroES-like protein
13_1_40cm_scaffold_3850_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

15443..15934
DNA (492bp) protein (164aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
proX; prolyl-tRNA editing protein ProX id=16802530 bin=RBG_16_Aminicenantes_63_16_plus species=Clostridium saccharoperbutylacetonicum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
YbaK/proline--tRNA ligase associated domain-containing protein
13_1_40cm_scaffold_3850_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

16050..16589
DNA (540bp) protein (180aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_3850_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

16741..18033
DNA (1293bp) protein (431aa)
hypothetical protein; K09760 DNA recombination protein RmuC Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Putative uncharacterized protein id=4214127 bin=GWF2_Lentisphaerae_57_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
13_1_40cm_scaffold_3850_17
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18125..18385
DNA (261bp) protein (87aa)
hypothetical protein id=17406776 bin=RBG_16_Aminicenantes_66_30 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
hypothetical protein
13_1_40cm_scaffold_3850_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

18436..18897
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFB5_9BACT
hypothetical protein; K07043 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Predicted metal-dependent hydrolase
Displaying 18 items

View Taxonomy