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13_1_40cm_scaffold_39347

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_39347_1

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comp(3..872)
DNA (870bp) protein (290aa)
Sigma-54-dependent transcriptional response regulator {ECO:0000313|EMBL:AHN97847.1}; TaxID=1447236 species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
Fis family two component sigma-54 specific transcriptional regulator id=12554723 bin=CNBR_ACIDO species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_scaffold_39347_2
RLO_RIF03_38_15, RIF3, Bacteria

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979..1236
DNA (258bp) protein (86aa)
id=4206259 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4206259 Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
13_1_40cm_scaffold_39347_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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1223..1561
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV99_9BACT id=1242406 bin=RBG2 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG2 organism_group=Chloroflexi
growth inhibitor Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
13_1_40cm_scaffold_39347_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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comp(1580..3025)
DNA (1446bp) protein (482aa)
SecC motif-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Putative uncharacterized protein id=2069372 bin=GWE2_Gallionellales_58_10 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
putative uncharacterized protein
13_1_40cm_scaffold_39347_5
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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3894..4205
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) RepID=K9ZCU5_ANACC
Uncharacterized protein {ECO:0000313|EMBL:KIJ74639.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
protein of unknown function DUF820
13_1_40cm_scaffold_39347_6
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4371..5288
DNA (918bp) protein (306aa)
Phosphoglycerate dehydrogenase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3ACJ7_9PROT
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EME70523.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Mag
phosphoglycerate dehydrogenase and related dehydrogenase
13_1_40cm_scaffold_39347_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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5384..5560
DNA (177bp) protein (59aa)
id=12554722 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
id=12554722 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_39347_8

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5561..5815
DNA (255bp) protein (85aa)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:AHN97849.1}; TaxID=1447236 species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
id=12554721 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_39347_9

Not on your lists

6093..7037
DNA (945bp) protein (315aa)
RNA polymerase sigma-D factor {ECO:0000313|EMBL:AHN97850.1}; TaxID=1447236 species="Bacteria; environmental samples.;" source="uncultured bacterium lac121.;"
fliA1; RNA polymerase sigma factor for flagellar operon; K02405 RNA polymerase sigma factor for flagellar operon FliA id=12554720 bin=CNBR_ACIDO species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNA polymerase sigma 28 subunit FliA/WhiG
13_1_40cm_scaffold_39347_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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comp(7146..7889)
DNA (744bp) protein (248aa)
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] id=12554719 bin=CNBR_ACIDO species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
GAF sensor hybrid histidine kinase
13_1_40cm_scaffold_39347_11
unknown

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8122..8613
DNA (492bp) protein (164aa)

This feature has no annotations

Displaying 11 items

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