ggKbase home page

13_1_40cm_scaffold_435

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_435_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(34..1026)
DNA (993bp) protein (331aa)
polyprenyl synthetase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ispB; octaprenyl diphosphate synthase; K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90] id=12554127 bin=CNBR_ACIDO species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ispB; octaprenyl diphosphate synthase
13_1_40cm_scaffold_435_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1050..1781)
DNA (732bp) protein (244aa)
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Hydrolase, TatD family n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HD53_ANADF
TatD family hydrolase
13_1_40cm_scaffold_435_3
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2105..2407)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036BE9EC
hydrolase Tax=GWC2_Geobacteraceae_53_11_curated
hydrolase
13_1_40cm_scaffold_435_4
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2692..4158)
DNA (1467bp) protein (489aa)
adenosine deaminase; K01488 adenosine deaminase [EC:3.5.4.4] Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
Adenosine deaminase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM40_KORVE
adenosine deaminase
13_1_40cm_scaffold_435_5
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4158..5690)
DNA (1533bp) protein (511aa)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source
Alpha-galactosidase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02B60_SOLUE
glycoside hydrolase clan GH-D
13_1_40cm_scaffold_435_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists


comp(5748..7940)
DNA (2193bp) protein (731aa)
Methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] id=12554129 bin=CNBR_ACIDO species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
metG; methionine--tRNA ligase (EC:6.1.1.10)
13_1_40cm_scaffold_435_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7937..9271)
DNA (1335bp) protein (445aa)
UPF0272 protein Acid345_2031 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQ18_KORVE
hypothetical protein; K09121 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_scaffold_435_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9453..10121)
DNA (669bp) protein (223aa)
DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
DNA repair protein RadC; K03630 DNA repair protein RadC id=12554131 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA repair protein RadC
13_1_40cm_scaffold_435_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10151..10732
DNA (582bp) protein (194aa)
Protein TolA id=4992472 bin=GWA2_Elusimicrobia_69_24 species=Monosiga brevicollis genus=Monosiga taxon_order=Choanoflagellida taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_scaffold_435_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(10871..11662)
DNA (792bp) protein (264aa)
diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7] id=12554133 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
diaminopimelate epimerase
13_1_40cm_scaffold_435_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11820..12578)
DNA (759bp) protein (253aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12554134 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type 11 methyltransferase
13_1_40cm_scaffold_435_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

12684..14324
DNA (1641bp) protein (547aa)
FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
Glycerol-3-phosphate dehydrogenase n=1 Tax=Moorea producens 3L RepID=F4XMP2_9CYAN
FAD dependent oxidoreductase
13_1_40cm_scaffold_435_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14294..15139)
DNA (846bp) protein (282aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein id=12554136 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_435_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(15254..15703)
DNA (450bp) protein (150aa)
D-tyrosyl-tRNA(Tyr) deacylase; K07560 D-tyrosyl-tRNA(Tyr) deacylase [EC:3.1.-.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=DTD_PELCD
D-tyrosyl-tRNA(Tyr) deacylase
13_1_40cm_scaffold_435_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(15771..16649)
DNA (879bp) protein (293aa)
PP-loop domain-containing protein; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
C32 tRNA thiolase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA id=12554138 bin=CNBR_ACIDO species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PP-loop domain-containing protein
13_1_40cm_scaffold_435_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(16850..17704)
DNA (855bp) protein (285aa)
Glycosyltransferase n=1 Tax=uncultured Acidobacteria bacterium HF0770_27F21 RepID=E0XYT0_9BACT
group 1 glycosyl transferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
group 1 glycosyl transferase
13_1_40cm_scaffold_435_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(17990..18796)
DNA (807bp) protein (269aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12554139 bin=CNBR_ACIDO species=Citreicella sp. 357 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_435_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(18783..19706)
DNA (924bp) protein (308aa)
NAD-dependent epimerase/dehydratase family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
NAD-dependent epimerase/dehydratase family protein id=12554140 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
oxidoreductase
13_1_40cm_scaffold_435_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(19691..20452)
DNA (762bp) protein (254aa)
methyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
methyltransferase id=12554141 bin=CNBR_ACIDO species=Novosphingobium pentaromativorans genus=Novosphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
methyltransferase
13_1_40cm_scaffold_435_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(20449..21660)
DNA (1212bp) protein (404aa)
putative glycosyltransferase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
group 1 glycosyl transferase family protein,putative id=12554142 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glycosyl transferase family 1
13_1_40cm_scaffold_435_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

21760..22707
DNA (948bp) protein (316aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12554143 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_435_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

22833..24968
DNA (2136bp) protein (712aa)
Family 31 glycosyl hydrolase, alpha-glucosidase {ECO:0000313|EMBL:CDM64169.1}; EC=3.2.1.177 {ECO:0000313|EMBL:CDM64169.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4;
putative alpha-glucosidase n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237CBF4
glycoside hydrolase family 31
13_1_40cm_scaffold_435_23
R_SM2F11_46_24, SM2F11, Bacteria

Not on your lists

comp(25131..26510)
DNA (1380bp) protein (460aa)
M12A family peptidase (EC:3.4.24.-)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PAF2_9DELT
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_24_curated
13_1_40cm_scaffold_435_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(26545..28173)
DNA (1629bp) protein (543aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12556093 bin=CNBR_ACIDO species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_435_25
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(28170..29951)
DNA (1782bp) protein (594aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12554144 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_435_26
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

30163..31278
DNA (1116bp) protein (372aa)
polysaccharide deacetylase id=12554150 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
polysaccharide deacetylase Tax=GWF2_Lentisphaerae_57_35_curated
polysaccharide deacetylase
13_1_40cm_scaffold_435_27
Limnoraphis robusta, Limnoraphis, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

31467..32567
DNA (1101bp) protein (367aa)
glycosyl transferase family protein id=12554146 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Glycosyltransferase {ECO:0000313|EMBL:KKD35777.1}; TaxID=1637645 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Limnoraphis.;" source="Limnoraphis robusta CS-951.;"
glycosyl transferase family protein
13_1_40cm_scaffold_435_28

Not on your lists

32570..33778
DNA (1209bp) protein (403aa)
Glycosyl transferase {ECO:0000313|EMBL:AFI78754.1}; EC=2.4.-.- {ECO:0000313|EMBL:AFI78754.1};; TaxID=1131830 species="Bacteria; environmental samples.;" source="uncultured bacterium ws198A12.;"
group 1 glycosyl transferase id=12554155 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
group 1 glycosyl transferase
13_1_40cm_scaffold_435_29
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

33778..34983
DNA (1206bp) protein (402aa)
lipopolysaccharide O-side chain biosynthesis protein id=12554147 bin=CNBR_ACIDO species=Thermococcus onnurineus genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
polysaccharide biosynthesis protein Tax=RBG_16_Chloroflexi_50_9_curated
Polysaccharide biosynthesis protein
13_1_40cm_scaffold_435_30
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34980..36599
DNA (1620bp) protein (540aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LU67_HALO1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY17431.1}; Flags: Precursor;; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;"
Displaying items 1-30 of 32 in total

View Taxonomy