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13_1_40cm_scaffold_460

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_460_1
RifOxyB12_full_Sideroxydans_59_6_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(243..1307)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AF41_AZOBR
hypothetical protein Tax=RifOxyB12_full_Sideroxydans_59_6_curated
hypothetical protein
13_1_40cm_scaffold_460_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

1703..2032
DNA (330bp) protein (110aa)
thioredoxin; K03671 thioredoxin 1 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
thioredoxin; K03671 thioredoxin 1 id=12556925 bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thioredoxin
13_1_40cm_scaffold_460_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2147..3094
DNA (948bp) protein (316aa)
trxB; thioredoxin reductase, FAD/NAD(P)-binding (EC:1.8.1.9) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
trxB; thioredoxin-disulfide reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] id=12556926 bin=CNBR_ACIDO species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
trxB; thioredoxin reductase, FAD/NAD(P)-binding (EC:1.8.1.9)
13_1_40cm_scaffold_460_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3194..4246)
DNA (1053bp) protein (351aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] id=12556927 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61)
13_1_40cm_scaffold_460_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(4434..5612)
DNA (1179bp) protein (393aa)
aminotransferase, class V; K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
class V aminotransferase; K04487 cysteine desulfurase [EC:2.8.1.7] id=12556928 bin=CNBR_ACIDO species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cysteine desulfurase (EC:2.8.1.7)
13_1_40cm_scaffold_460_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

5868..6296
DNA (429bp) protein (143aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12556929 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_460_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6430..7071
DNA (642bp) protein (214aa)
id=12556930 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
id=12556930 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_460_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7153..7944
DNA (792bp) protein (264aa)
hypothetical protein; K09134 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein; K09134 hypothetical protein id=12556931 bin=CNBR_ACIDO species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_460_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

8047..9270
DNA (1224bp) protein (408aa)
acyl-CoA dehydrogenase domain protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
acyl-CoA dehydrogenase domain-containing protein id=24458148 bin=RBG_19FT_COMBO_GAL15_69_19 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
acyl-CoA dehydrogenase
13_1_40cm_scaffold_460_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

9340..10332
DNA (993bp) protein (331aa)
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11); K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11); K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11] id=14627513 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11)
13_1_40cm_scaffold_460_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10453..11682
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI000365EE92
major facilitator superfamily MFS_1 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
major facilitator superfamily protein
13_1_40cm_scaffold_460_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

11663..12295
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000375B796
Sua5/YciO/YrdC/YwlC family protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein
13_1_40cm_scaffold_460_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12280..13551
DNA (1272bp) protein (424aa)
HflX; GTPase; K03665 GTP-binding protein HflX Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
HSR1-like GTP-binding protein; K03665 GTP-binding protein HflX id=12556932 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
GTP-binding protein HflX
13_1_40cm_scaffold_460_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

13740..15110
DNA (1371bp) protein (457aa)
type 12 methyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
TPR repeat-containing protein id=12556933 bin=CNBR_ACIDO species=Gloeobacter kilaueensis genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_460_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

15107..15670
DNA (564bp) protein (188aa)
phosphatidylglycerophosphate synthase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
pgsA_2; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] id=12556934 bin=CNBR_ACIDO species=Persephonella marina genus=Persephonella taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphatidylglycerophosphate synthase (EC:2.7.8.5)
13_1_40cm_scaffold_460_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

15667..16761
DNA (1095bp) protein (365aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8); K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cyclophilin type peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
cyclophilin type peptidyl-prolyl cis-trans isomerase id=12554692 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_460_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(16742..16987)
DNA (246bp) protein (82aa)
id=12557389 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
id=12557389 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_460_18
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17046..17750)
DNA (705bp) protein (235aa)
Trans-aconitate 2-methyltransferase {ECO:0000313|EMBL:ABS24689.1}; EC=2.1.1.144 {ECO:0000313|EMBL:ABS24689.1};; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cysto
Trans-aconitate 2-methyltransferase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7J3_ANADF
trans-aconitate 2-methyltransferase
13_1_40cm_scaffold_460_19
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

18332..18688
DNA (357bp) protein (119aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
13_1_40cm_scaffold_460_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

19123..20739
DNA (1617bp) protein (539aa)
heme ABC transporter ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
putative ABC transporter ATP-binding protein id=12557803 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter ATP-binding protein
Displaying 20 items

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