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13_1_40cm_scaffold_486

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_486_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1..1710)
DNA (1710bp) protein (570aa)
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
ABC transporter ATPase; K06158 ATP-binding cassette, subfamily F, member 3 id=12555764 bin=CNBR_ACIDO species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter ATP-binding protein
13_1_40cm_scaffold_486_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1779..2372)
DNA (594bp) protein (198aa)
response regulator receiver protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
response regulator receiver protein id=12555765 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
chemotaxis protein CheY
13_1_40cm_scaffold_486_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2376..4508)
DNA (2133bp) protein (711aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
nitrogen specific signal transduction histidine kinase NtrB (EC:2.7.13.3)
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UXN7_ROSS1
13_1_40cm_scaffold_486_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

4726..5316
DNA (591bp) protein (197aa)
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12555766 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-70 family RNA polymerase sigma factor
13_1_40cm_scaffold_486_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

5322..6116
DNA (795bp) protein (265aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_486_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

6126..6959
DNA (834bp) protein (278aa)
id=12555768 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_486_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

7012..7497
DNA (486bp) protein (162aa)
pyruvoyl-dependent arginine decarboxylase; K02626 arginine decarboxylase [EC:4.1.1.19] id=17092406 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_486_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(7472..7858)
DNA (387bp) protein (129aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_scaffold_486_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7855..8754)
DNA (900bp) protein (300aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12555771 bin=CNBR_ACIDO species=Streptomyces sp. FxanaC1 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lipoprotein
13_1_40cm_scaffold_486_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9137..9613
DNA (477bp) protein (159aa)
HslV; ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
ATP dependent peptidase subunit CodW; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] id=12555772 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP-dependent protease peptidase subunit
13_1_40cm_scaffold_486_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

9722..11101
DNA (1380bp) protein (460aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV83_KORVE
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hslU; ATP-dependent protease ATP-binding subunit HslU
13_1_40cm_scaffold_486_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

11200..12435
DNA (1236bp) protein (412aa)
fibronectin type III domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein id=12555774 bin=CNBR_ACIDO species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
fibronectin type III domain-containing protein
13_1_40cm_scaffold_486_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

12451..13218
DNA (768bp) protein (256aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C846_DESTA
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
13_1_40cm_scaffold_486_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

13346..13999
DNA (654bp) protein (218aa)
tal; Transaldolase; K00616 transaldolase [EC:2.2.1.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
putative translaldolase (EC:2.2.1.2); K00616 transaldolase [EC:2.2.1.2] id=12555776 bin=CNBR_ACIDO species=Methanocaldococcus vulcanius genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tal; transaldolase
13_1_40cm_scaffold_486_15
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

14000..15541
DNA (1542bp) protein (514aa)
carboxyl transferase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
carboxyl transferase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] id=12555777 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
carboxyl transferase
13_1_40cm_scaffold_486_16
unknown

Not on your lists

15759..15854
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying 16 items

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