ggKbase home page

13_1_40cm_scaffold_603

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_603_1
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(3..3482)
DNA (3480bp) protein (1160aa)
FOG: Ankyrin repeat-like protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RF8_SOLUE
ankyrin repeat-containing protein
FOG: Ankyrin repeat-like protein {ECO:0000313|EMBL:ABJ87762.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacte
13_1_40cm_scaffold_603_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3792..4709
DNA (918bp) protein (306aa)
M23 peptidase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
peptidase M23B id=12554108 bin=CNBR_ACIDO species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
M24/M37 family peptidase
13_1_40cm_scaffold_603_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

4931..7897
DNA (2967bp) protein (989aa)
protein translocase subunit SecA; K03070 preprotein translocase subunit SecA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
protein translocase subunit SecA; K03070 preprotein translocase subunit SecA id=12554109 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein translocase subunit SecA
13_1_40cm_scaffold_603_4
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7879..8985)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Rothia mucilaginosa (strain DY-18) RepID=D2NRU3_ROTMD
Uncharacterized protein {ECO:0000313|EMBL:EXI75355.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
hypothetical protein
13_1_40cm_scaffold_603_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

9216..9392
DNA (177bp) protein (59aa)
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Inosine-5'-monophosphate dehydrogenase n=1 Tax=uncultured Acidobacteria bacterium RepID=H5S9E5_9BACT
guaB; inosine-5'-monophosphate dehydrogenase
13_1_40cm_scaffold_603_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9515..10003)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MFD9_RHOM4
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_scaffold_603_7
unknown

Not on your lists

comp(10185..10361)
DNA (177bp) protein (59aa)

This feature has no annotations

13_1_40cm_scaffold_603_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(10366..11943)
DNA (1578bp) protein (526aa)
yjeF; carbohydrate kinase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
carbohydrate kinase id=12554112 bin=CNBR_ACIDO species=Desulfotomaculum nigrificans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
yjeF; carbohydrate kinase
13_1_40cm_scaffold_603_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12109..12822
DNA (714bp) protein (238aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Branched-chain amino acid aminotransferase id=4921079 bin=GWC2_Nitrospirae-rel_56_14 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
branched-chain amino acid aminotransferase, group I
13_1_40cm_scaffold_603_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(13005..14093)
DNA (1089bp) protein (363aa)
Maleylacetate reductase n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B687_9BURK
iron-containing alcohol dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
iron-containing alcohol dehydrogenase
13_1_40cm_scaffold_603_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

14200..15087
DNA (888bp) protein (296aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_603_12
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

15144..18290
DNA (3147bp) protein (1049aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037B46C2
TonB-dependent receptor Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
TonB-dependent receptor
13_1_40cm_scaffold_603_13
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18306..19397
DNA (1092bp) protein (364aa)
Glyoxalase family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6F6_PELHB
Glyoxalase {ECO:0000313|EMBL:GAN78164.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS
glyoxalase family protein
13_1_40cm_scaffold_603_14
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19426..20607
DNA (1182bp) protein (394aa)
Methionine synthase vitamin-B12 independent n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJL2_PSEUX
vitamin-B12 independent methionine synthase
Methionine synthase vitamin-B12 independent {ECO:0000313|EMBL:AEA25872.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocard
13_1_40cm_scaffold_603_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21004..21960
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI000368C90A
beta-lactamase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
beta-lactamase-like protein
13_1_40cm_scaffold_603_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

21995..22375
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI00036DD31A
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_603_17
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

22372..23283
DNA (912bp) protein (304aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_603_18
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(23459..25801)
DNA (2343bp) protein (781aa)
Uncharacterized protein n=1 Tax=Streptomyces scabies (strain 87.22) RepID=C9YZ19_STRSW
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_scaffold_603_19
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

26000..27247
DNA (1248bp) protein (416aa)
Thiol oxidoreductase-like protein n=1 Tax=uncultured Acidobacteria bacterium RepID=F2YWV5_9BACT
Thiol oxidoreductase-like protein {ECO:0000313|EMBL:AEA09215.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
thiol oxidoreductase-like protein
13_1_40cm_scaffold_603_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(27394..30282)
DNA (2889bp) protein (963aa)
glycine dehydrogenase (EC:1.4.4.2); K00281 glycine dehydrogenase [EC:1.4.4.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
glycine dehydrogenase, decarboxylating id=14425527 bin=bin1_lowGC species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=bin1_lowGC organism_group=Unknown_CP
glycine dehydrogenase
13_1_40cm_scaffold_603_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(30279..30656)
DNA (378bp) protein (126aa)
Glycine cleavage system H protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFI9_CHLTF
glycine cleavage system H protein; K02437 glycine cleavage system H protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
glycine cleavage system H protein
13_1_40cm_scaffold_603_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(30689..31804)
DNA (1116bp) protein (372aa)
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10) id=12554115 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10)
13_1_40cm_scaffold_603_23
unknown

Not on your lists

comp(31962..32369)
DNA (408bp) protein (136aa)

This feature has no annotations

13_1_40cm_scaffold_603_24
unknown

Not on your lists

comp(32366..33601)
DNA (1236bp) protein (412aa)

This feature has no annotations

13_1_40cm_scaffold_603_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(34248..35765)
DNA (1518bp) protein (506aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
two component sigma54 specific Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator id=12554116 bin=CNBR_ACIDO species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Fis family transcriptional regulator
13_1_40cm_scaffold_603_26
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(35870..36262)
DNA (393bp) protein (131aa)
id=12556046 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
13_1_40cm_scaffold_603_27
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(36259..36849)
DNA (591bp) protein (197aa)
id=12554118 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_603_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(36904..37254)
DNA (351bp) protein (117aa)
ComEA protein; K02237 competence protein ComEA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
competence protein ComEA-like protein with helix-hairpin-helix repeat region id=12554119 bin=CNBR_ACIDO species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
helix-hairpin-helix repeat-containing competence protein ComEA
13_1_40cm_scaffold_603_29
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(37548..39035)
DNA (1488bp) protein (496aa)
TPR repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XPN2_9BACT
Tfp pilus assembly protein PilF {ECO:0000313|EMBL:CDM66633.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
13_1_40cm_scaffold_603_30
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(39355..40185)
DNA (831bp) protein (277aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] id=12554122 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleoside-diphosphate-sugar epimerase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
WcaG; nucleoside-diphosphate-sugar epimerases
Displaying 30 items

View Taxonomy