ggKbase home page

13_1_40cm_scaffold_1311

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1311_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1..615
DNA (615bp) protein (205aa)
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
mreC; rod shape-determining protein MreC; K03570 rod shape-determining protein MreC id=12555484 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rod shape-determining protein MreC
13_1_40cm_scaffold_1311_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

612..1121
DNA (510bp) protein (170aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rod shape-determining protein MreD; K03571 rod shape-determining protein MreD id=12555483 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
mreD; rod shape-determining protein MreD
13_1_40cm_scaffold_1311_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1512..2918
DNA (1407bp) protein (469aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05515 penicillin-binding protein 2 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
peptidoglycan glycosyltransferase; K05515 penicillin-binding protein 2 id=12555482 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cell elongation specific D,D-transpeptidase
13_1_40cm_scaffold_1311_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2978..4072
DNA (1095bp) protein (365aa)
rodA; rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
rod shape-determining protein RodA; K05837 rod shape determining protein RodA id=12555481 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rod shape-determining protein RodA
13_1_40cm_scaffold_1311_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4115..5686
DNA (1572bp) protein (524aa)
Rne/Rng family ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] id=12555480 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cafA; ribonuclease G
13_1_40cm_scaffold_1311_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(5765..6298)
DNA (534bp) protein (178aa)
id=12555479 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
id=12555479 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_1311_7
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(6391..7638)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI000364751E
hypothetical protein Tax=RBG_16_Acidobacteria_68_9_curated
hypothetical protein
13_1_40cm_scaffold_1311_8
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7645..8397)
DNA (753bp) protein (251aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein id=24428414 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_scaffold_1311_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8400..8921)
DNA (522bp) protein (174aa)
RNA polymerase sigma factor n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3F9_ACIC5
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
RNA polymerase sigma factor
13_1_40cm_scaffold_1311_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9092..9442)
DNA (351bp) protein (117aa)
putative methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] id=12555478 bin=CNBR_ACIDO species=RAAC19 genus=RAAC19 taxon_order=RAAC19 taxon_class=RAAC19 phylum=OP11 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
methylated-DNA-[protein]-cysteine S-methyltransferase (EC:2.1.1.63)
13_1_40cm_scaffold_1311_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9445..10056)
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=uncultured gamma proteobacterium HF4000_48E10 RepID=E7C8P8_9GAMM
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
13_1_40cm_scaffold_1311_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10053..11018)
DNA (966bp) protein (322aa)
neutral protease Npr599 (EC:3.4.24.-) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
Npr n=1 Tax=Paenibacillus mucilaginosus (strain KNP414) RepID=F8FGY4_PAEMK
npr; hypothetical protein
13_1_40cm_scaffold_1311_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(11005..11715)
DNA (711bp) protein (237aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein id=12557261 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_1311_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(11747..13372)
DNA (1626bp) protein (542aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
hypothetical protein id=12557407 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_1311_15
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(13384..14757)
DNA (1374bp) protein (458aa)
Metal dependent phosphohydrolase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WKY0_GEOS8
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
metal dependent phosphohydrolase
13_1_40cm_scaffold_1311_16
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(14754..17042)
DNA (2289bp) protein (763aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
HEAT-like repeat-containing protein id=4256480 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
13_1_40cm_scaffold_1311_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(17049..18404)
DNA (1356bp) protein (452aa)
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
metal dependent phosphohydrolase id=14430382 bin=bin3_NC10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
metal dependent phosphohydrolase
13_1_40cm_scaffold_1311_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(18533..20761)
DNA (2229bp) protein (743aa)
HEAT repeat-containing PBS lyase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
HEAT-like repeat-containing protein id=4510910 bin=GWC2_Nitrospirae_57_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
HEAT-like repeat-containing protein
13_1_40cm_scaffold_1311_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

20803..22107
DNA (1305bp) protein (435aa)
pyrimidine-nucleoside phosphorylase; K00756 pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
pyrimidine-nucleoside phosphorylase; K00756 pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] id=12555476 bin=CNBR_ACIDO species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thymidine phosphorylase (EC:2.4.2.4)
13_1_40cm_scaffold_1311_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

22107..23348
DNA (1242bp) protein (414aa)
Na+ dependent nucleoside transporter domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VY0_SOLUE
Na+ dependent nucleoside transporter; K03317 concentrative nucleoside transporter, CNT family Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Na+ dependent nucleoside transporter
13_1_40cm_scaffold_1311_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

23348..24166
DNA (819bp) protein (273aa)
punA; purine-nucleoside phosphorylase (EC:2.4.2.1); K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] id=12555475 bin=CNBR_ACIDO species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
purine nucleoside phosphorylase I Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
purine nucleoside phosphorylase I
13_1_40cm_scaffold_1311_22
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

24153..24998
DNA (846bp) protein (282aa)
cytidine deaminase (EC:3.5.4.5); K01489 cytidine deaminase [EC:3.5.4.5] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
cytidine deaminase (EC:3.5.4.5)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003667112
13_1_40cm_scaffold_1311_23
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

25182..26243
DNA (1062bp) protein (354aa)
translation initiation factor 2B subunit I; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
translation initiation factor 2B subunit I; K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] id=12555473 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
translation initiation factor 2B subunit I
13_1_40cm_scaffold_1311_24
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(26358..27329)
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZX28_9BRAD
conserved exported hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
conserved exported hypothetical protein
13_1_40cm_scaffold_1311_25
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


27538..28584
DNA (1047bp) protein (349aa)
DNA-binding/iron metalloprotein/AP endonuclease; K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
O-sialoglycoprotein endopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] id=12555472 bin=CNBR_ACIDO species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
Displaying 25 items

View Taxonomy