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13_1_40cm_scaffold_1315

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1315_1
unknown

Not on your lists

comp(1..135)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_scaffold_1315_2
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(132..2024)
DNA (1893bp) protein (631aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
double-transmembrane region domain protein
hypothetical membrane protein id=12556782 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
13_1_40cm_scaffold_1315_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(2092..2994)
DNA (903bp) protein (301aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Putative uncharacterized protein id=4613995 bin=GWF2_Lentisphaerae_49_21 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
hypothetical protein
13_1_40cm_scaffold_1315_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(2998..4005)
DNA (1008bp) protein (336aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AB-629-E09 RepID=UPI000377AFE2
MoxR-like ATPase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
MoxR-like ATPase
13_1_40cm_scaffold_1315_5
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(4122..4907)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C5363
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein
13_1_40cm_scaffold_1315_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(4913..7438)
DNA (2526bp) protein (842aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein id=12555379 bin=CNBR_ACIDO species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_1315_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7536..8009)
DNA (474bp) protein (158aa)
isoprenylcysteine carboxyl methyltransferase n=1 Tax=Streptomyces violaceoniger RepID=UPI0003C74D7C
srsB; methyltransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
srsB; methyltransferase
13_1_40cm_scaffold_1315_8
unknown

Not on your lists

8020..8277
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_scaffold_1315_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(8274..9527)
DNA (1254bp) protein (418aa)
Geranylgeranyl reductase family protein n=1 Tax=Saccharomonospora glauca K62 RepID=I1CX94_9PSEU
geranylgeranyl reductase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
geranylgeranyl reductase
13_1_40cm_scaffold_1315_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9633..10055)
DNA (423bp) protein (141aa)
beta-ketoacyl synthase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Beta-ketoacyl synthase id=2086762 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
3-oxoacyl-ACP synthase
13_1_40cm_scaffold_1315_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(10019..10831)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI0003625714
3-oxoacyl-ACP synthase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
beta-ketoacyl synthase
13_1_40cm_scaffold_1315_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

10895..11569
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI00036D991E
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
integral membrane protein
13_1_40cm_scaffold_1315_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11559..11972)
DNA (414bp) protein (138aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
id=12555381 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_scaffold_1315_14
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(12018..13700)
DNA (1683bp) protein (561aa)
Hypothetical conserved protein n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFF1_9BACT
Hypothetical conserved protein {ECO:0000313|EMBL:BAL54887.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
13_1_40cm_scaffold_1315_15
unknown

Not on your lists

14010..14792
DNA (783bp) protein (261aa)

This feature has no annotations

13_1_40cm_scaffold_1315_16
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(15044..16507)
DNA (1464bp) protein (488aa)
Amidohydrolase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q025P8_SOLUE
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
amidohydrolase
13_1_40cm_scaffold_1315_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(16859..19663)
DNA (2805bp) protein (935aa)
TonB-dependent receptor n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V8T0_TERSS
TonB-dependent receptor Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
TonB-dependent receptor
13_1_40cm_scaffold_1315_18
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

19782..22175
DNA (2394bp) protein (798aa)
ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C135_SPHTD
13_1_40cm_scaffold_1315_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

22206..23519
DNA (1314bp) protein (438aa)
peptidase M24 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B6F349
Xaa-Pro aminopeptidase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
peptidase M24
13_1_40cm_scaffold_1315_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(23643..24341)
DNA (699bp) protein (233aa)
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17)
Similar to phosphatidylethanolamine N-methyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFH5_9BACT
13_1_40cm_scaffold_1315_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(24422..26302)
DNA (1881bp) protein (627aa)
methionine synthase I/5,10-methylenetetrahydrofolate reductase (EC:2.1.1.10); K00547 homocysteine S-methyltransferase [EC:2.1.1.10] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
methionine synthase I/5,10-methylenetetrahydrofolate reductase (EC:2.1.1.10)
Methylenetetrahydrofolate reductase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHT4_CHLTF
13_1_40cm_scaffold_1315_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(26387..27082)
DNA (696bp) protein (232aa)
Serine/threonine protein phosphatase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MXL7_CORCM
serine/threonine protein phosphatase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
serine/threonine protein phosphatase
13_1_40cm_scaffold_1315_23
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(27224..27673)
DNA (450bp) protein (150aa)
nuoI; NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) (EC:1.6.99.5) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
nuoI; NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) (EC:1.6.99.5) id=14430286 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
nuoI; NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) (EC:1.6.99.5)
13_1_40cm_scaffold_1315_24
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

27713..29035
DNA (1323bp) protein (441aa)
signal transduction histidine kinase LytS Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
signal transduction histidine kinase LytS id=12555385 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sensor signal transduction histidine kinase
13_1_40cm_scaffold_1315_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

29072..29869
DNA (798bp) protein (266aa)
LytR/AlgR family transcriptional regulator; K07705 two-component system, LytT family, response regulator LytT Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
LytTR family two component transcriptional regulator; K07705 two-component system, LytT family, response regulator LytT id=12555386 bin=CNBR_ACIDO species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
LytR/AlgR family transcriptional regulator
13_1_40cm_scaffold_1315_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

29890..30630
DNA (741bp) protein (247aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=12555387 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lepB1; signal peptidase I (EC:3.4.21.89)
signal peptidase I Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
13_1_40cm_scaffold_1315_27
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

30800..31654
DNA (855bp) protein (285aa)
Cation efflux system protein (Zinc/cadmium) n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TT88_METAC
cation diffusion facilitator family transporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
cation efflux system protein
13_1_40cm_scaffold_1315_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

31708..32571
DNA (864bp) protein (288aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
13_1_40cm_scaffold_1315_29
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(32549..33322)
DNA (774bp) protein (258aa)
Glutamine cyclotransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q020V1_SOLUE
glutamine cyclotransferase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
glutamine cyclotransferase
13_1_40cm_scaffold_1315_30
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(33326..34312)
DNA (987bp) protein (329aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISS3_KORVE id=5223684 bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
D-isomer specific 2-hydroxyacid dehydrogenase
Displaying items 1-30 of 39 in total

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