ggKbase home page

13_1_20cm_2_scaffold_6162

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_6162_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..207
DNA (207bp) protein (69aa)
monooxygenase FAD-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_2_scaffold_6162_2
unknown

Not on your lists

comp(481..1650)
DNA (1170bp) protein (390aa)

This feature has no annotations

13_1_20cm_2_scaffold_6162_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1667..2287
DNA (621bp) protein (207aa)
Uncharacterized ABC transporter ATP-binding protein TM_0352 n=2 Tax=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) RepID=Y352_THEMA
putative ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter ATP-binding protein YvcR
13_1_20cm_2_scaffold_6162_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2284..2700
DNA (417bp) protein (139aa)
id=3870377 Tax=GWA2_Rokubacteria_73_35_curated
13_1_20cm_2_scaffold_6162_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2697..3122
DNA (426bp) protein (142aa)
id=3609760 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_20cm_2_scaffold_6162_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3122..3493
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5R5_GEOUR
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
membrane protein
13_1_20cm_2_scaffold_6162_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3494..4216)
DNA (723bp) protein (241aa)
Polysaccharide deacetylase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SHI8_THEM7
polysaccharide deacetylase Tax=GWA2_Rokubacteria_73_35_curated
polysaccharide deacetylase
13_1_20cm_2_scaffold_6162_8
unknown

Not on your lists

4250..4369
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_20cm_2_scaffold_6162_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(4344..5036)
DNA (693bp) protein (231aa)
id=14625572 Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
13_1_20cm_2_scaffold_6162_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5188..6555
DNA (1368bp) protein (456aa)
Extracellular ligand-binding receptor n=1 Tax=Haloferax denitrificans ATCC 35960 RepID=M0JJ63_9EURY
branched chain amino acid ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
branched chain amino acid ABC transporter substrate-binding protein
13_1_20cm_2_scaffold_6162_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6676..8907
DNA (2232bp) protein (744aa)
Putative uncharacterized protein Tax=CSP1_6_Rokubacteria
13_1_20cm_2_scaffold_6162_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8923..9798
DNA (876bp) protein (292aa)
Inner-membrane translocator n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3D3_STAND
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_20cm_2_scaffold_6162_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9815..10759
DNA (945bp) protein (315aa)
Inner-membrane translocator n=3 Tax=Oligotropha carboxidovorans RepID=B6JE76_OLICO
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
branched-chain amino acid ABC transporter permease
13_1_20cm_2_scaffold_6162_14
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10669..11037)
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:KEH11063.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
13_1_20cm_2_scaffold_6162_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11449..12162
DNA (714bp) protein (238aa)
Putative ABC transport system, ATP-binding protein n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0M8L5_BORPB
branched-chain amino acid ABC transporter,ATP-binding component (LivF-like) Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter ATP-binding protein
13_1_20cm_2_scaffold_6162_16
Corynebacterium aurimucosum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12313..13323
DNA (1011bp) protein (337aa)
PREDICTED: calphotin-like n=1 Tax=Danio rerio RepID=UPI0003837F63
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:ACP33930.1}; TaxID=548476 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium aurimucosu
Fe-S oxidoreductase
13_1_20cm_2_scaffold_6162_17
unknown

Not on your lists

comp(13725..13934)
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_20cm_2_scaffold_6162_trna_1
unknown

Not on your lists

14598..14670
DNA (73bp)
transferRNA
13_1_20cm_2_scaffold_6162_18
unknown

Not on your lists

14709..15104
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_20cm_2_scaffold_6162_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15124..16029
DNA (906bp) protein (302aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RX97_RHORT
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_20cm_2_scaffold_6162_20
unknown

Not on your lists

comp(15864..16202)
DNA (339bp) protein (113aa)

This feature has no annotations

13_1_20cm_2_scaffold_6162_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16312..17364
DNA (1053bp) protein (351aa)
MmgE/PrpD family protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L6U7_PSEUX
MmgE/PrpD family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
MmgE/PrpD family protein
13_1_20cm_2_scaffold_6162_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17377..18528
DNA (1152bp) protein (384aa)
acyl-CoA dehydrogenase domain-containing protein; K04117 cyclohexanecarboxyl-CoA dehydrogenase [EC:1.3.99.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acyl-CoA dehydrogenase domain protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WVW7_ALIAD rbh
acyl-CoA dehydrogenase domain-containing protein
Displaying 23 items

View Taxonomy