ggKbase home page

13_1_20cm_full_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_full_scaffold_12_1
unknown

Not on your lists

comp(1..210)
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_20cm_full_scaffold_12_2
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

493..1074
DNA (582bp) protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF05516.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandara
13_1_20cm_full_scaffold_12_3

Not on your lists

1491..1931
DNA (441bp) protein (147aa)
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48375.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
13_1_20cm_full_scaffold_12_4
unknown

Not on your lists

1945..2352
DNA (408bp) protein (136aa)

This feature has no annotations

13_1_20cm_full_scaffold_12_5
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

2500..2796
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EGS5_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF83887.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
13_1_20cm_full_scaffold_12_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2804..3616
DNA (813bp) protein (271aa)
membrane protein n=1 Tax=Pseudomonas fuscovaginae RepID=UPI00036D09B4
Putative membrane protein {ECO:0000313|EMBL:EJL77315.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF31
permease
13_1_20cm_full_scaffold_12_7
unknown

Not on your lists

3907..4086
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_20cm_full_scaffold_12_8

Not on your lists

4262..5059
DNA (798bp) protein (266aa)
RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7Q1_9BACT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
RpoD family RNA polymerase sigma factor
13_1_20cm_full_scaffold_12_trna_1
unknown

Not on your lists

5220..5301
DNA (82bp)
transferRNA
13_1_20cm_full_scaffold_12_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5410..6099)
DNA (690bp) protein (230aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|SAAS:SAAS00031329}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|S
Glucose-6-phosphate isomerase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VLF4_9GAMM
phosphate glucokinase
13_1_20cm_full_scaffold_12_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6125..7159)
DNA (1035bp) protein (345aa)
Response regulator receiver protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYR0_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EDY20601.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_full_scaffold_12_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(7214..8638)
DNA (1425bp) protein (475aa)
AMP-dependent synthetase and ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY54_9BACT
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EDY21202.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
AMP-dependent synthetase and ligase
13_1_20cm_full_scaffold_12_12
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


8689..8916
DNA (228bp) protein (76aa)
50S ribosomal protein L31 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY55_9BACT
rpmE; ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
rpmE; ribosomal protein L31
13_1_20cm_full_scaffold_12_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

8983..10068
DNA (1086bp) protein (362aa)
Peptide chain release factor 1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY56_9BACT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" sour
peptide chain release factor 1
13_1_20cm_full_scaffold_12_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

10156..10992
DNA (837bp) protein (279aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltra
Release factor glutamine methyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CY64_9BACT rbh
protein-(glutamine-N5) methyltransferase
13_1_20cm_full_scaffold_12_15
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

10985..12247
DNA (1263bp) protein (421aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylp
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=uncultured Verrucomicrobia bacterium RepID=D2DXT1_9BACT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
13_1_20cm_full_scaffold_12_16
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12317..12688
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PCJ5_9ZZZZ
hypothetical protein Tax=RBG_16_Deltaproteobacteria_54_11_curated
hypothetical protein
13_1_20cm_full_scaffold_12_17
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12696..13625)
DNA (930bp) protein (310aa)
nfo; apurinic endonuclease Nfo (EC:3.1.21.2) Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
apurinic endonuclease Apn1 (EC:3.1.21.2)
Probable endonuclease 4 n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R954_AMMDK
13_1_20cm_full_scaffold_12_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(13640..16036)
DNA (2397bp) protein (799aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D235_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EDY19275.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_full_scaffold_12_19
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16221..16541
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744915
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
hypothetical protein
13_1_20cm_full_scaffold_12_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

16618..17073
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZC8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20819.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_full_scaffold_12_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

17210..18052
DNA (843bp) protein (281aa)
Peptidoglycan-binding LysM n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW40_9BACT
Peptidoglycan-binding LysM {ECO:0000313|EMBL:EDY21632.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_full_scaffold_12_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

18144..19130
DNA (987bp) protein (329aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW39_9BACT rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=
acetyl-CoA carboxylase, carboxyl transferase subunit alpha
13_1_20cm_full_scaffold_12_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19136..19939
DNA (804bp) protein (268aa)
Uncharacterized protein Tax=CSP1_6_Rokubacteria
13_1_20cm_full_scaffold_12_24
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

19962..20768
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAG2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16623.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_full_scaffold_12_25
unknown

Not on your lists

comp(20779..20949)
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_20cm_full_scaffold_12_26
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21032..21946)
DNA (915bp) protein (305aa)
Esterase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NNY1_GRAMM
Putative alpha-dextrin endo-1, 6-alpha-glucosidase {ECO:0000313|EMBL:KFE72130.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae;
esterase
13_1_20cm_full_scaffold_12_27
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

21965..22675
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00036C146D
esterase Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
esterase
13_1_20cm_full_scaffold_12_28
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

22931..23905
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB51_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16329.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_full_scaffold_12_29
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

24049..24927
DNA (879bp) protein (293aa)
Methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745AEA
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Displaying items 1-30 of 33 in total

View Taxonomy