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13_1_20cm_full_scaffold_442

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_full_scaffold_442_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..404)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00035FD3AA
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABE40230.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhod
13_1_20cm_full_scaffold_442_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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503..1051
DNA (549bp) protein (183aa)
Nuclear protein SET n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNM9_9BACT
Nuclear protein SET {ECO:0000313|EMBL:EEF58569.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedospha
hypothetical protein
13_1_20cm_full_scaffold_442_3

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comp(1243..2673)
DNA (1431bp) protein (477aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrola
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZK1_9BACT rbh
13_1_20cm_full_scaffold_442_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2716..3894)
DNA (1179bp) protein (393aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, E
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZK0_9BACT rbh
13_1_20cm_full_scaffold_442_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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4039..4971
DNA (933bp) protein (311aa)
Transcriptional regulator, TrmB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZJ9_9BACT
Transcriptional regulator, TrmB {ECO:0000313|EMBL:EDY20163.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
transcriptional regulator
13_1_20cm_full_scaffold_442_6

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5015..7027
DNA (2013bp) protein (671aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B6BECD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49070.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_20cm_full_scaffold_442_7

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7189..9195
DNA (2007bp) protein (669aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B6BECD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49069.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_20cm_full_scaffold_442_8
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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9254..10015
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E0S7_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGV31699.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodoco
hypothetical protein
13_1_20cm_full_scaffold_442_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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10085..10882
DNA (798bp) protein (266aa)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase {ECO:0000313|EMBL:EEF58719.1}; EC=4.1.1.68 {ECO:0000313|EMBL:EEF58719.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verruco
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN57_9BACT
2-keto-4-pentenoate hydratase
13_1_20cm_full_scaffold_442_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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11071..12075
DNA (1005bp) protein (335aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKR3_9BACT
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EEF59556.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source
tolQ; biopolymer transport protein, MotA/TolQ/ExbB family
13_1_20cm_full_scaffold_442_11
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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12086..12523
DNA (438bp) protein (146aa)
Biopolymer transport protein n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3E0E8_METI4
exbD; biopolymer transport protein
Biopolymer transport protein {ECO:0000313|EMBL:ACD84377.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.
13_1_20cm_full_scaffold_442_12

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12531..13157
DNA (627bp) protein (209aa)
TonB family protein n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z3X7_DESAT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49402.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TonB family protein
13_1_20cm_full_scaffold_442_13
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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13177..13656
DNA (480bp) protein (160aa)
Biopolymer transport protein n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3E0E8_METI4
exbD; biopolymer transport protein
Biopolymer transport protein {ECO:0000313|EMBL:ACD84377.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.
13_1_20cm_full_scaffold_442_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


comp(13653..14255)
DNA (603bp) protein (201aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
Non-canonical purine NTP pyrophosphatase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8T3_9BACT
Ham1 family protein
13_1_20cm_full_scaffold_442_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


14451..17000
DNA (2550bp) protein (850aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=320771 species="Bacteria; Verruco
leucyl-tRNA synthetase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B77 rbh
leucyl-tRNA synthetase
13_1_20cm_full_scaffold_442_16
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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17015..17473
DNA (459bp) protein (153aa)
Large-conductance mechanosensitive channel n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=MSCL_LARHH
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel Tax=RBG_13_Deltaproteobacteria_52_11b_curated
Large-conductance mechanosensitive channel
13_1_20cm_full_scaffold_442_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

17568..18125
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAL6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16534.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
3D domain-containing protein
13_1_20cm_full_scaffold_442_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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18159..19130
DNA (972bp) protein (324aa)
UDP-glucose 4-epimerase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF4_9BACT rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EDY20118.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
galE; UDP-glucose 4-epimerase
13_1_20cm_full_scaffold_442_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(19217..20200)
DNA (984bp) protein (328aa)
Glycosyl transferase family 9 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYF5_9BACT rbh
Glycosyl transferase family 9 {ECO:0000313|EMBL:EDY20496.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rfaF; ADP-heptose:LPS heptosyltransferase
13_1_20cm_full_scaffold_442_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(20298..20720)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017457FE
Uncharacterized protein {ECO:0000313|EMBL:EDY18905.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_full_scaffold_442_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(20917..22335)
DNA (1419bp) protein (473aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
MiaB family RNA modification protein (EC:1.3.1.74)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3P9_9BACT rbh
13_1_20cm_full_scaffold_442_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

22462..23340
DNA (879bp) protein (293aa)
S-methyl-5'-thioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.28 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID
mtaP; 5'-methylthioadenosine phosphorylase (EC:2.4.2.28)
S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZS2_9BACT
13_1_20cm_full_scaffold_442_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(23427..24611)
DNA (1185bp) protein (395aa)
8-amino-7-oxononanoate synthase {ECO:0000256|SAAS:SAAS00087543}; EC=2.3.1.47 {ECO:0000256|SAAS:SAAS00087543};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D346_9BACT rbh
13_1_20cm_full_scaffold_442_24
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

24656..25060
DNA (405bp) protein (135aa)
glyoxalase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017460B2
glyoxalase
Glyoxalase {ECO:0000313|EMBL:AHF90444.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
13_1_20cm_full_scaffold_442_25
unknown

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25086..25283
DNA (198bp) protein (66aa)

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Displaying 25 items

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