ggKbase home page

13_1_20cm_2_scaffold_1

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_1_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


comp(3..1457)
DNA (1455bp) protein (485aa)
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RBG_13_Bathyarchaeota_46_16b_curated
phenylalanyl-tRNA synthetase beta chain (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit alias=gwa2_scaffold_588_60 id=5044558 tax=GW2011_AR10 species=Pyrococcus yayanosii genus=Pyrococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota organism_desc=gwa2_.44_58 (temp)
13_1_20cm_2_scaffold_1_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(1459..2970)
DNA (1512bp) protein (504aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RBG_16_Archaea_50_20_curated
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LJ36_THEBM
phenylalanyl-tRNA synthetase subunit alpha
13_1_20cm_2_scaffold_1_3
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists

comp(3098..3574)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFR1_9BACT
hypothetical protein Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
hypothetical protein
13_1_20cm_2_scaffold_1_4
unknown

Not on your lists

comp(3616..4359)
DNA (744bp) protein (248aa)

This feature has no annotations

13_1_20cm_2_scaffold_1_5
unknown

Not on your lists

comp(4580..5398)
DNA (819bp) protein (273aa)

This feature has no annotations

13_1_20cm_2_scaffold_1_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(5395..6507)
DNA (1113bp) protein (371aa)
methionine synthase (B12-independent); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RBG_16_Archaea_50_20_curated
methionine synthase (B12-independent) (EC:2.1.1.14)
hypothetical protein n=1 Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI0003661661
13_1_20cm_2_scaffold_1_7
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(6601..7584)
DNA (984bp) protein (328aa)
Cobalamin-independent synthase MetE-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXR9_RUBXD
cobalamin-independent synthase MetE-like protein Tax=CSP1_3_Armatimonadetes
cobalamin-independent synthase MetE-like protein
13_1_20cm_2_scaffold_1_8
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

Not on your lists

7708..8268
DNA (561bp) protein (187aa)
Transcriptional regulator, XRE family n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BKG8_9EURY
hypothetical protein Tax=RBG_16_Bathyarchaeota_57_9_curated
transcriptional regulator, XRE family
13_1_20cm_2_scaffold_1_9
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

8835..9788
DNA (954bp) protein (318aa)
Putative circadian clock protein, KaiC n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQ54_ARCVS
hypothetical protein containing KaiC-domain Tax=RBG_13_Bathyarchaeota_38_9_curated
circadian clock protein KaiC
13_1_20cm_2_scaffold_1_10
RBG_16_Chloroflexi_51_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(9848..10234)
DNA (387bp) protein (129aa)
Pyridoxamine 5'-phosphate oxidase-like FMN-binding protein n=1 Tax=Natronococcus amylolyticus DSM 10524 RepID=L9WXI3_9EURY
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=RBG_16_Chloroflexi_51_16_curated
hypothetical protein
13_1_20cm_2_scaffold_1_11
CG_Solirubrobact_01, Rubrobacteridae, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10391..11428)
DNA (1038bp) protein (346aa)
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.59); K00150 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)) [EC:1.2.1.59] Tax=CG_Solirubrobact_01
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.59)
Glyceraldehyde-3-phosphate dehydrogenase, type II n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K0H8_DEHLB
13_1_20cm_2_scaffold_1_12
unknown

Not on your lists

11662..12654
DNA (993bp) protein (331aa)

This feature has no annotations

13_1_20cm_2_scaffold_1_13
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(12772..13179)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Gordonia rhizosphera NBRC 16068 RepID=K6WBD6_9ACTO
hypothetical protein Tax=RBG_16_Zixibacteria_53_22_curated
Glyoxalase-like domain protein
13_1_20cm_2_scaffold_1_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

13449..14726
DNA (1278bp) protein (426aa)
DNA primase DnaG n=1 Tax=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) RepID=DNAG_PYRFU
DNA primase Tax=RBG_16_Archaea_50_20_curated
DNA primase
13_1_20cm_2_scaffold_1_15
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(14703..17072)
DNA (2370bp) protein (790aa)
DNA polymerase Pol2; K02319 DNA polymerase I [EC:2.7.7.7] Tax=RBG_16_Archaea_50_20_curated
DNA polymerase n=1 Tax=Thermofilum sp. 1910b RepID=S5Z6M3_9CREN
DNA polymerase
13_1_20cm_2_scaffold_1_16
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


17422..17835
DNA (414bp) protein (138aa)
30S ribosomal protein S11 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RS11_METKA
rps11p; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11 Tax=RBG_16_Archaea_50_20_curated
rps11p; 30S ribosomal protein S11
13_1_20cm_2_scaffold_1_17
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

17887..19035
DNA (1149bp) protein (383aa)
Serine hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000255|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000255|HAMAP-Rule:MF_00051};; EC=2.1.2.- {ECO:0000255|HAM
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
hypothetical protein n=2 Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI00037DA33D rbh
13_1_20cm_2_scaffold_1_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

19066..20043
DNA (978bp) protein (326aa)
PREDICTED: serine racemase-like isoform X3 n=1 Tax=Aplysia californica RepID=UPI0003593F8F
Pyridoxal-5'-phosphate-dependent protein beta subunit {ECO:0000313|EMBL:AHG92280.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Pyridoxal-5'-phosphate-dependent protein beta subunit
13_1_20cm_2_scaffold_1_19
unknown

Not on your lists

20363..20557
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_20cm_2_scaffold_1_20
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

20697..21758
DNA (1062bp) protein (354aa)
hypothetical protein n=2 Tax=unclassified Crenarchaeota RepID=UPI000379DD81 rbh
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:BAJ46630.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candi
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_20cm_2_scaffold_1_21
unknown

Not on your lists

comp(21866..22306)
DNA (441bp) protein (147aa)

This feature has no annotations

13_1_20cm_2_scaffold_1_22
unknown

Not on your lists

comp(22359..22817)
DNA (459bp) protein (153aa)

This feature has no annotations

13_1_20cm_2_scaffold_1_23
unknown

Not on your lists

22840..23010
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_20cm_2_scaffold_1_24
unknown

Not on your lists

23491..23649
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_20cm_2_scaffold_1_25
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23877..24653)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Bacillus cereus BAG5X2-1 RepID=J8BK27_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EJQ51985.1}; TaxID=1053191 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus BAG5X2-
type 11 methyltransferase
13_1_20cm_2_scaffold_1_26
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(24770..25369)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HKJ1_PYRSN
putative transcriptional regulator; K06024 segregation and condensation protein B Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_20cm_2_scaffold_1_27
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(25347..25979)
DNA (633bp) protein (211aa)
Condensin subunit ScpA n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TVH0_9ARCH
segregation and condensation protein A; K05896 segregation and condensation protein A Tax=RBG_16_Archaea_50_20_curated
segregation and condensation protein A
13_1_20cm_2_scaffold_1_28
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(26021..29560)
DNA (3540bp) protein (1180aa)
Chromosome segregation ATPase n=1 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TB52_9ARCH
chromosome segregation protein smc1; K03529 chromosome segregation protein Tax=RBG_16_Archaea_50_20_curated
chromosome segregation ATPase
13_1_20cm_2_scaffold_1_29
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(29639..30421)
DNA (783bp) protein (261aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31); K15888 tritrans,polycis-undecaprenyl-diphosphate synthase [geranylgeranyl-diphosphate specific] [EC:2.5.1.89] Tax=RBG_16_Archaea_50_20_curated
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
hypothetical protein n=3 Tax=unclassified Crenarchaeota RepID=UPI00038014D5
13_1_20cm_2_scaffold_1_30
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(30418..31221)
DNA (804bp) protein (268aa)
Pnp; purine nucleoside phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RBG_16_Archaea_50_20_curated
methylthioadenosine phosphorylase (EC:2.4.2.28)
Probable S-methyl-5'-thioinosine phosphorylase n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0T9Y4_METSL
Displaying items 1-30 of 104 in total

View Taxonomy