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13_1_20cm_4_scaffold_2984

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2984_1
R_NC10_66_22, NC10, Bacteria

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comp(31..942)
DNA (912bp) protein (304aa)
alpha-methylacyl-CoA racemase (EC:5.1.99.4) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative acyl-CoA transferase/carnitine dehydratase n=1 Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WE01_DESOD
acyl-CoA transferase/carnitine dehydratase
13_1_20cm_4_scaffold_2984_2
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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986..2707
DNA (1722bp) protein (574aa)
DNA polymerase IV (Family X) domain and PHP phosphoesterase domain protein PRK08609 n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5E9Z8_GEOBB
DNA polymerase IV (Family X) domain and PHP phosphoesterase domain protein PRK08609 {ECO:0000313|EMBL:ACH37296.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadal
DNA polymerase IV domain-/PHP phosphoesterase domain-containing protein
13_1_20cm_4_scaffold_2984_3
unknown

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2754..3272
DNA (519bp) protein (173aa)

This feature has no annotations

13_1_20cm_4_scaffold_2984_4
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(3883..4758)
DNA (876bp) protein (292aa)
galU; UTP--glucose-1-phosphate uridylyltransferase (EC:2.7.7.9); K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] Tax=RBG_16_Nitrospirae_64_22_curated
galU; UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A909_CARHZ
13_1_20cm_4_scaffold_2984_5
unknown

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comp(4768..4920)
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_20cm_4_scaffold_2984_6
unknown

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comp(4939..5331)
DNA (393bp) protein (131aa)

This feature has no annotations

13_1_20cm_4_scaffold_2984_7
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5328..5816)
DNA (489bp) protein (163aa)
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SDX7_9CHLR id=1247114 bin=RBG9 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gammaproteobacteria_66_13_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_20cm_4_scaffold_2984_8
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(5800..6987)
DNA (1188bp) protein (396aa)
8-amino-7-oxononanoate synthase {ECO:0000256|SAAS:SAAS00087543}; EC=2.3.1.47 {ECO:0000256|SAAS:SAAS00087543};; TaxID=986075 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Caldalkalib
2-amino-3-ketobutyrate CoA ligase (EC:2.3.1.29)
Pyridoxal phosphate-dependent acyltransferase n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L9Q6_9BACI rbh
13_1_20cm_4_scaffold_2984_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(6998..8041)
DNA (1044bp) protein (348aa)
tdh; L-threonine 3-dehydrogenase; K00060 threonine 3-dehydrogenase [EC:1.1.1.103] Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Alcohol dehydrogenase GroES domain protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MG40_RHOM4 rbh
alcohol dehydrogenase GroES domain-containing protein
13_1_20cm_4_scaffold_2984_10

Not on your lists

8105..8332
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI00036D0835
Marine sediment metagenome DNA, contig: S01H4_C03425 {ECO:0000313|EMBL:GAG56506.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
13_1_20cm_4_scaffold_2984_11
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8329..8736)
DNA (408bp) protein (136aa)
Pyridoxamine 5'-phosphate oxidase-related protein FMN-binding n=1 Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BZC1_BEUC1
Pyridoxamine 5'-phosphate oxidase-related protein FMN-binding {ECO:0000313|EMBL:ACQ79093.1}; TaxID=471853 species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Be
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
13_1_20cm_4_scaffold_2984_12
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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comp(9792..12170)
DNA (2379bp) protein (793aa)
ribonucleoside-diphosphate reductase class II (EC:1.17.4.1) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
vitamin B12-dependent ribonucleotide reductase (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] id=12555790 bin=CNBR_ACIDO species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribonucleoside-diphosphate reductase class II (EC:1.17.4.1)
13_1_20cm_4_scaffold_2984_13
unknown

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12304..12561
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_20cm_4_scaffold_2984_14
unknown

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12581..12685
DNA (105bp) protein (35aa)

This feature has no annotations

13_1_20cm_4_scaffold_2984_15
unknown

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12695..13000
DNA (306bp) protein (102aa)

This feature has no annotations

13_1_20cm_4_scaffold_2984_16
RBG_19FT_COMBO_Chloroflexi_47_15_curated, Chloroflexi, Bacteria

Not on your lists

comp(12997..14829)
DNA (1833bp) protein (611aa)
GTP-binding protein TypA n=1 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K0D7_DEHLB
GTP-binding protein TypA; K06207 GTP-binding protein Tax=RBG_19FT_COMBO_Chloroflexi_47_15_curated
GTP-binding protein TypA
13_1_20cm_4_scaffold_2984_17
Cyanothece sp. PCC 7424, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(14847..15758)
DNA (912bp) protein (304aa)
Alpha/beta hydrolase fold protein n=1 Tax=Cyanothece sp. (strain PCC 7424) RepID=B7KDZ2_CYAP7
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACK71690.1}; TaxID=65393 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 74
alpha/beta hydrolase fold protein
13_1_20cm_4_scaffold_2984_18
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15777..16190)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AXS2_RUBXD
Uncharacterized protein {ECO:0000313|EMBL:ABG03806.1}; Flags: Precursor;; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacte
hypothetical protein
13_1_20cm_4_scaffold_2984_19
unknown

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comp(16241..16696)
DNA (456bp) protein (152aa)

This feature has no annotations

13_1_20cm_4_scaffold_2984_20
RBG_13_Euryarchaeota_57_23_curated, Euryarchaeota, Archaea

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comp(16678..17481)
DNA (804bp) protein (268aa)
glutamate formiminotransferase; K00603 glutamate formiminotransferase [EC:2.1.2.5] Tax=RBG_13_Euryarchaeota_57_23_curated
glutamate formiminotransferase (EC:2.1.2.5)
Glutamate formiminotransferase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RXZ9_THEOJ
13_1_20cm_4_scaffold_2984_21
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17520..18740)
DNA (1221bp) protein (407aa)
hutI; imidazolonepropionase (EC:3.5.2.7); K01468 imidazolonepropionase [EC:3.5.2.7] Tax=RBG_16_Deltaproteobacteria_47_11_curated
Imidazolonepropionase n=1 Tax=mine drainage metagenome RepID=T1B1Q9_9ZZZZ
imidazolonepropionase
13_1_20cm_4_scaffold_2984_22
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18753..20402)
DNA (1650bp) protein (550aa)
Urocanate hydratase {ECO:0000255|HAMAP-Rule:MF_00577}; Short=Urocanase {ECO:0000255|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000255|HAMAP-Rule:MF_00577};; Imidazolonepropionate hydrolase {ECO:0000255|
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=HUTU_SYMTH rbh
13_1_20cm_4_scaffold_2984_23
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(20399..20641)
DNA (243bp) protein (81aa)
histidine ammonia-lyase (EC:4.3.1.3); K01745 histidine ammonia-lyase [EC:4.3.1.3] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
histidine ammonia-lyase (EC:4.3.1.3)
Histidine ammonia-lyase n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0JRH6_9FIRM
Displaying 23 items

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