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13_1_40cm_2_scaffold_3542

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3542_1
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(1..936)
DNA (936bp) protein (312aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021K3_SOLUE
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
Fis family transcriptional regulator
13_1_40cm_2_scaffold_3542_2
R_Acidobacteria_60_20, Acidobacteria, Bacteria

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comp(933..3155)
DNA (2223bp) protein (741aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=mine drainage metagenome RepID=E6QJT6_9ZZZZ
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
multi-sensor signal transduction histidine kinase
13_1_40cm_2_scaffold_3542_3
GWA2_Deltaproteobacteria_55_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3152..3889)
DNA (738bp) protein (246aa)
HhH-GPD family protein; K07457 endonuclease III related protein Tax=GWA2_Deltaproteobacteria_55_10_curated
Putative glycosylase id=4734430 bin=GWC2_Deltaproteobacteria_55_46 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
HhH-GPD family protein
13_1_40cm_2_scaffold_3542_4
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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4132..5856
DNA (1725bp) protein (575aa)
Type II secretion system protein E n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRV6_KORVE
type II secretion system protein E
Type II secretion system protein E {ECO:0000313|EMBL:ABF40394.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versat
13_1_40cm_2_scaffold_3542_5
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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5902..7017
DNA (1116bp) protein (372aa)
Pilus retraction protein PilT n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDI4_CHLTF
pilus retraction protein PilT; K02669 twitching motility protein PilT Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
pilus retraction protein PilT
13_1_40cm_2_scaffold_3542_6
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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7079..8251
DNA (1173bp) protein (391aa)
Type II secretion system protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRV8_KORVE
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
type II secretion system protein
13_1_40cm_2_scaffold_3542_7
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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8389..9999
DNA (1611bp) protein (537aa)
signal transduction histidine kinase, nitrogen specific, NtrB; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRV9_KORVE
signal transduction histidine kinase, nitrogen specific, NtrB
13_1_40cm_2_scaffold_3542_8
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

10047..11423
DNA (1377bp) protein (459aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRW0_KORVE
two component, sigma54 specific, Fis family transcriptional regulator; K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
Fis family transcriptional regulator
13_1_40cm_2_scaffold_3542_9
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

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11751..11870
DNA (120bp) protein (40aa)
Pilin, type IV, putative n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRC9_KORVE
pilin, type IV Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
pilin, type IV
Displaying 9 items

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