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13_1_40cm_3_scaffold_1052

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_1052_1
unknown

Not on your lists

comp(1..78)
DNA (78bp) protein (26aa)

This feature has no annotations

13_1_40cm_3_scaffold_1052_2
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(378..2699)
DNA (2322bp) protein (774aa)
hypothetical protein n=1 Tax=Streptomyces sp. 351MFTsu5.1 RepID=UPI0003794834 rbh
hypothetical protein
AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system {ECO:0000313|EMBL:CEL23018.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudo
13_1_40cm_3_scaffold_1052_3
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(2696..3343)
DNA (648bp) protein (216aa)
Putative uncharacterized protein n=1 Tax=Streptomyces fradiae RepID=Q45R88_STRFR
Putative uncharacterized protein {ECO:0000313|EMBL:AAZ23072.1}; TaxID=1906 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Strepto
ABC transporter
13_1_40cm_3_scaffold_1052_4
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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3632..3865
DNA (234bp) protein (78aa)
Putative uncharacterized protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
hypothetical protein id=14628547 bin=bin8_Chloro species=Actinopolymorpha alba genus=Actinopolymorpha taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
13_1_40cm_3_scaffold_1052_5
BJP_IG2069_Syntrophobacterales_47_18, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4114..4512)
DNA (399bp) protein (133aa)
id=5049631 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=BJP_IG2069_Syntrophobacterales_47_18
13_1_40cm_3_scaffold_1052_6
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4654..5778)
DNA (1125bp) protein (375aa)
Putative uncharacterized protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F9S1_9DELT id=5225741 bin=16ft_combo_ws3_JS1 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Lactonase, 7-bladed beta-propeller {ECO:0000313|EMBL:GAO01742.1}; Flags: Precursor;; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobac
putative 3-carboxymuconate cyclase
13_1_40cm_3_scaffold_1052_7
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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5977..6693
DNA (717bp) protein (239aa)
winged helix family two component transcriptional regulator id=14630092 bin=bin8_Chloro species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
winged helix family two component transcriptional regulator Tax=CSP1_4_Chloroflexi
two component transcriptional regulator
13_1_40cm_3_scaffold_1052_8
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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6728..7759
DNA (1032bp) protein (344aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3); K07642 two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] id=14630091 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3); K07642 two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3] Tax=CSP1_4_Chloroflexi
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
13_1_40cm_3_scaffold_1052_9
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

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7958..8161
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Patulibacter americanus RepID=UPI0003B35E72
LuxR family two component transcriptional regulator; K11618 two-component system, NarL family, response regulator LiaR Tax=RBG_16_Chloroflexi_64_32_curated
response regulator receiver protein
13_1_40cm_3_scaffold_1052_10
unknown

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comp(8210..8671)
DNA (462bp) protein (154aa)

This feature has no annotations

13_1_40cm_3_scaffold_1052_11
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(8686..9693)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=2 Tax=Saccharopolyspora erythraea RepID=A4FH21_SACEN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAM03346.1}; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (
13_1_40cm_3_scaffold_1052_12
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10438..11049)
DNA (612bp) protein (204aa)
Transcriptional regulator, TetR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AR83_RUBXD
Uncharacterized protein {ECO:0000313|EMBL:KJS42009.1}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium
TetR family transcriptional regulator
13_1_40cm_3_scaffold_1052_13
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11106..11621
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CH13_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR51998.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulos
hypothetical protein
13_1_40cm_3_scaffold_1052_14
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11582..11929)
DNA (348bp) protein (116aa)
Adenylate cyclase {ECO:0000313|EMBL:AIY18985.1}; EC=4.6.1.1 {ECO:0000313|EMBL:AIY18985.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="
Putative gualylate cyclase protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SPZ6_NOCSJ
gualylate cyclase
13_1_40cm_3_scaffold_1052_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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12044..12289
DNA (246bp) protein (82aa)
id=4341237 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
id=4341237 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_3_scaffold_1052_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12291..12449
DNA (159bp) protein (53aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Displaying 16 items

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