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13_1_40cm_3_scaffold_3029

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3029_1
Thermobaculum terrenum, Thermobaculum, Bacteria

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comp(1..387)
DNA (387bp) protein (129aa)
alkylglycerone-phosphate synthase (EC:2.5.1.26)
Alkylglycerone-phosphate synthase {ECO:0000313|EMBL:ACZ43348.1}; EC=2.5.1.26 {ECO:0000313|EMBL:ACZ43348.1};; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATC
Alkylglycerone-phosphate synthase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CHX7_THET1
13_1_40cm_3_scaffold_3029_2
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(326..1483)
DNA (1158bp) protein (386aa)
anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC:1.1.5.3)
Glycerol 3-phosphate dehydrogenase (Quinone) subunit B {ECO:0000313|EMBL:ABC82301.1}; EC=1.1.5.3 {ECO:0000313|EMBL:ABC82301.1};; Flags: Precursor;; TaxID=290397 species="Bacteria; Proteobacteria; Delt
Glycerol 3-phosphate dehydrogenase (Quinone) subunit B n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IKX0_ANADE
13_1_40cm_3_scaffold_3029_3
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(1492..2325)
DNA (834bp) protein (278aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=383372 species="Bacteria; Chloroflexi;
Riboflavin biosynthesis protein RibF n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NIC6_ROSCS
riboflavin biosynthesis protein RibF
13_1_40cm_3_scaffold_3029_4
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(2394..3308)
DNA (915bp) protein (305aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) s
tRNA pseudouridine synthase B n=2 Tax=Chloroflexus RepID=A9WGQ0_CHLAA
tRNA pseudouridine synthase B
13_1_40cm_3_scaffold_3029_5
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3286..4059)
DNA (774bp) protein (258aa)
Exopolyphosphatase-like enzyme n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PLA2_9FIRM
phosphoesterase; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
DHH family protein
13_1_40cm_3_scaffold_3029_6
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4287..4652)
DNA (366bp) protein (122aa)
Ribosome-binding factor A n=1 Tax=Desmospora sp. 8437 RepID=F5SC68_9BACL
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora.;" sourc
ribosome-binding factor A
13_1_40cm_3_scaffold_3029_7
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

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comp(4685..5464)
DNA (780bp) protein (260aa)
translation initiation factor IF-2 n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B2E411
translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=667014 species="Bacteria; Thermodesulfobacteria; Thermodesulfobacteriales; Thermodesulfobacte
13_1_40cm_3_scaffold_3029_8
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(5461..6615)
DNA (1155bp) protein (385aa)
translation initiation factor IF-2; K02519 translation initiation factor IF-2 id=14629001 bin=bin8_Chloro species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=CSP1_4_Chloroflexi
translation initiation factor IF-2
13_1_40cm_3_scaffold_3029_9
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(6672..6980)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R8X8_AMMDK
Uncharacterized protein {ECO:0000313|EMBL:KFN09104.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macer
hypothetical protein
13_1_40cm_3_scaffold_3029_10
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(6961..7992)
DNA (1032bp) protein (344aa)
NusA antitermination factor n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFX3_THET1
NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;
13_1_40cm_3_scaffold_3029_11
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7955..8425)
DNA (471bp) protein (157aa)
Ribosome maturation factor RimP n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=RIMP_HALHL
hypothetical protein
Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077}; TaxID=349124 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="
13_1_40cm_3_scaffold_3029_12
RBG_16_OP11_43_9_curated, Microgenomates, Bacteria

Not on your lists

comp(8446..9534)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Candidatus Microgenomatus auricola SCGC AAA011-E14 RepID=UPI00036D4835
protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF Tax=RBG_16_OP11_43_9_curated
protein-export membrane protein SecF
13_1_40cm_3_scaffold_3029_13
R_OD1_Yanofskybacteria_50_12, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(9518..11032)
DNA (1515bp) protein (505aa)
Protein translocase subunit SecD n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4J3_SPHTD
protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_50_12_curated
protein-export membrane protein SecD
13_1_40cm_3_scaffold_3029_14
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(11245..11451)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7P9_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ37882.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" sourc
13_1_40cm_3_scaffold_3029_15
R_SM2F11_49_9, SM2F11, Bacteria

Not on your lists

comp(11470..12495)
DNA (1026bp) protein (342aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPHIGHO2_01_FULL_SM2F11_49_9_curated
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Paenibacillus alvei DSM 29 RepID=K4ZL74_PAEAL
Holliday junction ATP-dependent DNA helicase ruvB
13_1_40cm_3_scaffold_3029_16
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12492..13094)
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000255|HAMAP-Rule:MF_00031}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_00031};; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridial
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RUVA_SYMTH
ruvA; Holliday junction DNA helicase RuvA
13_1_40cm_3_scaffold_3029_17
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(13091..13399)
DNA (309bp) protein (103aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C327_SPHTD
13_1_40cm_3_scaffold_3029_18
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(13488..14456)
DNA (969bp) protein (323aa)
Probable transcriptional regulatory protein Nther_1800 n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=Y1800_NATTJ
hypothetical protein Tax=RBG_13_Chloroflexi_51_18_curated
hypothetical protein
13_1_40cm_3_scaffold_3029_19
Thermotoga sp. Cell2, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(14485..15630)
DNA (1146bp) protein (382aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:00002
Tyrosine--tRNA ligase n=1 Tax=Thermotoga sp. EMP RepID=J9DSA6_9THEM
13_1_40cm_3_scaffold_3029_20
unknown

Not on your lists

comp(15637..16191)
DNA (555bp) protein (185aa)

This feature has no annotations

13_1_40cm_3_scaffold_3029_21
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16188..18575)
DNA (2388bp) protein (796aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=SYFB_MOOTA
13_1_40cm_3_scaffold_3029_22
CG_CPR17-01, CG_CPR17, Bacteria

Not on your lists


comp(18582..18875)
DNA (294bp) protein (98aa)
pheS; phenylalanine--tRNA ligase alpha chain (EC:6.1.1.20) Tax=CG_CPR17-01
pheS; phenylalanyl-tRNA synthetase subunit alpha
Phenylalanine--tRNA ligase alpha subunit id=4926426 bin=GWC2_CPR2_39_35 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_CPR2_39_35 organism_group=CPR2 organism_desc=Candidate for curation
Displaying 22 items

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