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13_1_40cm_3_scaffold_405

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_405_1
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists


comp(48..1013)
DNA (966bp) protein (322aa)
30S ribosomal protein S3 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=RS3_ROSS1
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_16_Chloroflexi_50_9_curated
30S ribosomal protein S3
13_1_40cm_3_scaffold_405_2
GWC1_CPR2_41_48, CPR2, Bacteria

Not on your lists


comp(1014..1361)
DNA (348bp) protein (116aa)
50S ribosomal protein L22 id=2394496 bin=GWD1_TM7_39_7 species=Amycolicicoccus subflavus genus=Amycolicicoccus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD1_TM7_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D2_39_7
50S ribosomal protein L22 {ECO:0000313|EMBL:KKS08842.1}; TaxID=1618344 species="Bacteria; candidate division CPR2.;" source="candidate division CPR2 bacterium GW2011_GWC1_41_48.;"
rplV; 50S ribosomal protein L22
13_1_40cm_3_scaffold_405_3
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1375..1659)
DNA (285bp) protein (95aa)
30S ribosomal protein S19 n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LST9_TEPAE
30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepi
13_1_40cm_3_scaffold_405_4
Clostridium sp. CAG:813, Melainabacteria, Bacteria

Not on your lists


comp(1664..1834)
DNA (171bp) protein (57aa)
50S ribosomal protein L2 n=1 Tax=Fusobacterium sp. CAG:815 RepID=R7M0V9_9FUSO
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1262843 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostr
rplB; 50S ribosomal protein L2
13_1_40cm_3_scaffold_405_5
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(1831..2463)
DNA (633bp) protein (211aa)
50S ribosomal protein L2 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQL4_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivor
ribosomal protein L2
13_1_40cm_3_scaffold_405_6
Eubacterium sp. CAG:786, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2474..2788)
DNA (315bp) protein (105aa)
50S ribosomal protein L23 n=1 Tax=Eubacterium sp. CAG:786 RepID=R5H6F8_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1262893 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environ
LSU ribosomal protein L23P
13_1_40cm_3_scaffold_405_7
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


comp(2785..3540)
DNA (756bp) protein (252aa)
50S ribosomal protein L4 n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZL1_CALAS
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RBG_16_Chloroflexi_56_8_curated
rplD; 50S ribosomal protein L4
13_1_40cm_3_scaffold_405_8
Clostridium sp. CAG:452, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3582..4214)
DNA (633bp) protein (211aa)
50S ribosomal protein L3 n=1 Tax=Patulibacter americanus RepID=UPI0003B466B0
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1262810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environm
50S ribosomal protein L3
13_1_40cm_3_scaffold_405_9
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists


comp(4241..4546)
DNA (306bp) protein (102aa)
30S ribosomal protein S10 n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=RS10_HELMI
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 Tax=RBG_16_RIF_CHLX_70_13_curated
RpsJ; ribosomal protein S10
13_1_40cm_3_scaffold_405_10
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4573..5760)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SHA5_GEOOG
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilale
13_1_40cm_3_scaffold_405_11
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5774..7882)
DNA (2109bp) protein (703aa)
Elongation factor G n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=EFG_MOOTA
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobactera
fusA; elongation factor G
13_1_40cm_3_scaffold_405_12
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists


comp(7891..8361)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2K1_SPHTD
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;"
13_1_40cm_3_scaffold_405_13
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists


comp(8361..8747)
DNA (387bp) protein (129aa)
30S ribosomal protein S12 n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M2W7_ACIFD
30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=525909 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimi
13_1_40cm_3_scaffold_405_14
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8817..9452
DNA (636bp) protein (212aa)
16S RNA G1207 methylase RsmC n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE7E9
16S RNA G1207 methylase RsmC {ECO:0000313|EMBL:ETK37896.1}; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA
methyltransferase small
13_1_40cm_3_scaffold_405_15
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(9449..10465)
DNA (1017bp) protein (339aa)
Putative oligopeptide ABC transporter ATP-binding protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I1L3_CALAS
putative oligopeptide ABC transporter ATP-binding protein
Putative oligopeptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAL99150.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="
13_1_40cm_3_scaffold_405_16
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(10452..11516)
DNA (1065bp) protein (355aa)
Oligopeptide ABC transporter, ATP-binding protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L0D6_THERP
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
oligopeptide ABC transporter ATP-binding protein
13_1_40cm_3_scaffold_405_17
Dehalococcoides mccartyi, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(11534..12448)
DNA (915bp) protein (305aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Dehalococcoides mccartyi RepID=A5FQK0_DEHSB
PepT transporter family, permease
PepT transporter family, permease {ECO:0000313|EMBL:AGG06597.1}; TaxID=1193807 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalo
13_1_40cm_3_scaffold_405_18
Dehalococcoides sp. UCH007, Dehalococcoides, Dehalococcoidales, Dehalococcoidia, Chloroflexi, Bacteria

Not on your lists

comp(12449..13477)
DNA (1029bp) protein (343aa)
Oligopeptide transport system permease protein n=1 Tax=Dehalococcoides mccartyi GY50 RepID=V5QDU5_9CHLR
oligopeptide transport system permease protein
DNA, complete genome {ECO:0000313|EMBL:BAQ34851.1}; TaxID=1522671 species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalococcoidales; Dehalococcoidaceae; Dehalococcoides.;" source="Dehalococcoides sp.
13_1_40cm_3_scaffold_405_19
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(13491..15191)
DNA (1701bp) protein (567aa)
Putative ABC transporter, substrate binding protein (Oligopeptide) n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KY51_THERP
putative ABC transporter substrate binding protein
Putative ABC transporter, substrate binding protein (Oligopeptide) {ECO:0000313|EMBL:ACM04538.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;"
13_1_40cm_3_scaffold_405_20
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(15379..17049)
DNA (1671bp) protein (557aa)
Extracellular solute-binding protein family 5 n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G386_CHLAD
family 5 extracellular solute-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ACL25259.1}; Flags: Precursor;; TaxID=326427 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexac
13_1_40cm_3_scaffold_405_21
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(17204..19183)
DNA (1980bp) protein (660aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=RPOC_CHLAD
DNA-directed RNA polymerase subunit beta'
13_1_40cm_3_scaffold_405_22
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(19180..21387)
DNA (2208bp) protein (736aa)
DNA-directed RNA polymerase subunit beta' id=4877455 bin=GWC2_Chloroflexi_73_18 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
DNA-directed RNA polymerase subunit beta'' Tax=RBG_16_RIF_CHLX_69_14_curated
rpoC; DNA-directed RNA polymerase subunit beta'
13_1_40cm_3_scaffold_405_23
unknown

Not on your lists

comp(21406..21552)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_3_scaffold_405_24
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(21549..25040)
DNA (3492bp) protein (1164aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2J8_SPHTD rbh
DNA-directed RNA polymerase subunit beta
13_1_40cm_3_scaffold_405_25
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

25270..26418
DNA (1149bp) protein (383aa)
Aminotransferase class V n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B7D5_HERA2
class V aminotransferase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
class V aminotransferase
13_1_40cm_3_scaffold_405_26
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26411..26806)
DNA (396bp) protein (132aa)
50S ribosomal protein L7/L12 n=2 Tax=Desulfotomaculum RepID=F6B5N4_DESCC
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carb
13_1_40cm_3_scaffold_405_27
S_Thermacetogenium_phaeum_55_64, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26813..27346)
DNA (534bp) protein (178aa)
50S ribosomal protein L10 n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LLH5_THEPS
50S ribosomal protein L10 Tax=S_Thermacetogenium_phaeum_55_64
rplJ; 50S ribosomal protein L10
13_1_40cm_3_scaffold_405_28
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(27485..28216)
DNA (732bp) protein (244aa)
50S ribosomal protein L1 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQJ9_9FIRM
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivor
rplA; 50S ribosomal protein L1
13_1_40cm_3_scaffold_405_29
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists


comp(28219..28647)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B30EC4
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RBG_16_RIF_CHLX_69_14_curated
50S ribosomal protein L11
13_1_40cm_3_scaffold_405_30
S_Thermacetogenium_phaeum_55_64, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28647..29207)
DNA (561bp) protein (187aa)
Transcription termination/antitermination protein NusG n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LIV4_THEPS
nusG; transcription antitermination protein NusG
Transcription termination/antitermination protein nusG Tax=S_Thermacetogenium_phaeum_55_64
Displaying items 1-30 of 63 in total

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