ggKbase home page

13_1_40cm_3_scaffold_16525

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_16525_1
unknown

Not on your lists

1..198
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_3_scaffold_16525_2
unknown

Not on your lists

419..1294
DNA (876bp) protein (292aa)

This feature has no annotations

13_1_40cm_3_scaffold_16525_3
unknown

Not on your lists

1335..1817
DNA (483bp) protein (161aa)

This feature has no annotations

13_1_40cm_3_scaffold_16525_4
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1814..2059
DNA (246bp) protein (82aa)
Oxidoreductase {ECO:0000313|EMBL:EJZ06603.1}; TaxID=1194972 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
13_1_40cm_3_scaffold_16525_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

2056..2754
DNA (699bp) protein (233aa)
Putative oxidoreductase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A025_9ACTN
putative oxidoreductase Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
putative oxidoreductase
13_1_40cm_3_scaffold_16525_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2765..3484)
DNA (720bp) protein (240aa)
Uncharacterized membrane protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative integral membrane protein DUF125 id=3870878 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_APKG5H11 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative membrane protein
13_1_40cm_3_scaffold_16525_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3487..4014)
DNA (528bp) protein (176aa)
Alkyl hydroperoxide reductase n=1 Tax=planctomycete KSU-1 RepID=I3ILD6_9PLAN
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
peroxiredoxin
13_1_40cm_3_scaffold_16525_8
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4111..6405
DNA (2295bp) protein (765aa)
peptidase, m1 (aminopeptidase n) family (EC:3.4.11.-)
Uncharacterized protein n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q091L2_STIAD
Uncharacterized protein {ECO:0000313|EMBL:EAU66420.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Sti
13_1_40cm_3_scaffold_16525_9
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

6660..7865
DNA (1206bp) protein (402aa)
putative oxidoreductase; K15736 L-2-hydroxyglutarate oxidase [EC:1.1.3.-] Tax=RBG_13_Acidobacteria_68_16_curated
Putative oxidoreductase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N5S8_ANATU id=5224033 bin=16ft_combo_ws3_JS1 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
putative oxidoreductase
13_1_40cm_3_scaffold_16525_10
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7850..9985)
DNA (2136bp) protein (712aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y5Y1_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP38318.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
13_1_40cm_3_scaffold_16525_11
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10388..11035
DNA (648bp) protein (216aa)
Trypsin domain protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CZZ9_MYXXD
serine protease
Trypsin domain protein {ECO:0000313|EMBL:ABF91961.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococc
13_1_40cm_3_scaffold_16525_12
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11051..12286)
DNA (1236bp) protein (412aa)
Two component transcriptional regulator, Fis family n=1 Tax=Pelodictyon luteolum (strain DSM 273) RepID=Q3B5Z9_PELLD
Fis family transcriptional regulator Tax=RBG_13_Deltaproteobacteria_65_10_curated
Fis family transcriptional regulator
13_1_40cm_3_scaffold_16525_13
unknown

Not on your lists

comp(12611..13009)
DNA (399bp) protein (133aa)

This feature has no annotations

13_1_40cm_3_scaffold_16525_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13102..13704
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BKZ0_9GAMM
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_3_scaffold_16525_15
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

13712..14884
DNA (1173bp) protein (391aa)
rnd; ribonuclease D (EC:3.1.13.5)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899, ECO:0000313|EMBL:CBK42155.1}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899, ECO:0000313|EMBL:CBK42155
Ribonuclease D n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G4X6_9GAMM
13_1_40cm_3_scaffold_16525_16
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(14907..15326)
DNA (420bp) protein (140aa)
Tax=RBG_16_Acidobacteria_68_9_curated
13_1_40cm_3_scaffold_16525_17
unknown

Not on your lists

comp(15317..16729)
DNA (1413bp) protein (471aa)

This feature has no annotations

Displaying 17 items

View Taxonomy