ggKbase home page

13_1_40cm_3_scaffold_2515

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_2515_1
unknown

Not on your lists

comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

13_1_40cm_3_scaffold_2515_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(107..1489)
DNA (1383bp) protein (461aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A07_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ82119.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source=
13_1_40cm_3_scaffold_2515_3
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1476..2183)
DNA (708bp) protein (236aa)
ABC transporter related n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8I9Y1_METNO
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACL57209.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
13_1_40cm_3_scaffold_2515_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

2273..2890
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EQS3_MODMB
protein of unknown function UPF0016
Uncharacterized protein {ECO:0000313|EMBL:AHG92322.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_3_scaffold_2515_5
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3044..3763
DNA (720bp) protein (240aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFS9_RHOMR
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEN72538.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodo
13_1_40cm_3_scaffold_2515_6
RLO_PLX_64_10, Bacteria

Not on your lists

3754..4167
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YPY8_LYNSP
major facilitator superfamily protein
Major Facilitator Superfamily Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
13_1_40cm_3_scaffold_2515_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(4164..5018)
DNA (855bp) protein (285aa)
Peptidase M56, BlaR1 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028S1_SOLUE
peptidase M56, BlaR1
Peptidase M56, BlaR1 {ECO:0000313|EMBL:ABJ82481.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="So
13_1_40cm_3_scaffold_2515_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(5071..5571)
DNA (501bp) protein (167aa)
Transcriptional repressor, CopY family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMP6_KORVE
CopY family transcriptional regulator; K07737 putative transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
CopY family transcriptional regulator
13_1_40cm_3_scaffold_2515_9
R_OD1_45_26, Parcubacteria, Bacteria

Not on your lists

5746..6192
DNA (447bp) protein (149aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_45_26_curated
hypothetical protein id=22679 bin=ACD22 species=ACD22 genus=ACD22 taxon_order=ACD22 taxon_class=ACD22 phylum=WWE3 tax=ACD22 organism_group=WWE3 organism_desc=WWE3
13_1_40cm_3_scaffold_2515_10
unknown

Not on your lists

comp(6152..6400)
DNA (249bp) protein (83aa)

This feature has no annotations

13_1_40cm_3_scaffold_2515_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6609..7307
DNA (699bp) protein (233aa)
Sigma-54 interacting regulator {ECO:0000313|EMBL:CDM66572.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_3_scaffold_2515_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

7283..9637
DNA (2355bp) protein (785aa)
Sigma-54 interaction domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHS4_CHLTF rbh
Sigma-54 interacting regulator {ECO:0000313|EMBL:CDM66572.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
sigma-54 interaction domain-containing protein
13_1_40cm_3_scaffold_2515_13
unknown

Not on your lists

10502..11032
DNA (531bp) protein (177aa)

This feature has no annotations

13_1_40cm_3_scaffold_2515_14
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

11140..11340
DNA (201bp) protein (67aa)
hypothetical protein Tax=RBG_13_Aminicenantes_59_9_curated
Uncharacterized protein id=2199492 bin=GWB2_Deltaproteobacteria_65_81 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
13_1_40cm_3_scaffold_2515_15
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

11352..12674
DNA (1323bp) protein (441aa)
hypothetical protein Tax=RBG_13_Nitrospirae_39_12_curated
Uncharacterized protein id=4765234 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae rbh
hypothetical protein
13_1_40cm_3_scaffold_2515_16
unknown

Not on your lists

12688..12882
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_3_scaffold_2515_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13123..14169
DNA (1047bp) protein (349aa)
Transposase IS4 family protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHQ2_9EURY
Transposase, IS4 family protein/SWIM domain fusion Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transposase, IS4 family protein/SWIM domain fusion
13_1_40cm_3_scaffold_2515_18
unknown

Not on your lists

comp(14142..14252)
DNA (111bp) protein (37aa)

This feature has no annotations

13_1_40cm_3_scaffold_2515_19
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14897..15070
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746390
hypothetical protein
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ47717.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Me
13_1_40cm_3_scaffold_2515_20
unknown

Not on your lists

comp(15553..15873)
DNA (321bp) protein (107aa)

This feature has no annotations

13_1_40cm_3_scaffold_2515_21
unknown

Not on your lists

16072..16194
DNA (123bp) protein (41aa)

This feature has no annotations

13_1_40cm_3_scaffold_2515_22
Desulfonatronospira thiodismutans, Desulfonatronospira, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16284..16496)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SM62_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EFI35773.1}; TaxID=555779 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfohalobiaceae; Desulfonatronospira.;" source="Desul
hypothetical protein
13_1_40cm_3_scaffold_2515_23
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(16496..16750)
DNA (255bp) protein (85aa)
YcfA-like protein n=1 Tax=Xenococcus sp. PCC 7305 RepID=L8M4I2_9CYAN
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
conserved hypothetical protein
13_1_40cm_3_scaffold_2515_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(16762..17523)
DNA (762bp) protein (254aa)
MoxR-like ATPase (EC:1.7.2.5)
MoxR-like ATPase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJT6_CHLTF
MoxR-like ATPase {ECO:0000313|EMBL:CDM66877.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_3_scaffold_2515_25
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(17572..18321)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LD95_CHLTF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEP11955.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (stra
13_1_40cm_3_scaffold_2515_26
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

18344..19450
DNA (1107bp) protein (369aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinom
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDQ3_CHLTF rbh
13_1_40cm_3_scaffold_2515_27
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

19582..19875
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B54EF4
Uncharacterized protein family (UPF0150) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
hypothetical protein
13_1_40cm_3_scaffold_2515_28
GWB1_OD1_37_5, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

19862..20104
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B4C941
Uncharacterized protein {ECO:0000313|EMBL:KKQ34959.1}; TaxID=1618742 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWB1_37_5.;"
putative periplasmic or secreted lipoprotein
13_1_40cm_3_scaffold_2515_29
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

20225..22027
DNA (1803bp) protein (601aa)
Signal peptide peptidase SppA, 67K type {ECO:0000313|EMBL:CDM66879.1}; EC=3.4.21.- {ECO:0000313|EMBL:CDM66879.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomon
Protease IV n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MI46_9BACT rbh
signal peptide peptidase SppA, 67K type
13_1_40cm_3_scaffold_2515_30
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22061..22615)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00037F5832
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL23581.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
Displaying items 1-30 of 36 in total

View Taxonomy