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13_1_40cm_3_scaffold_3755

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_3_scaffold_3755_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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136..1191
-----------------
DNA (1056bp)
protein (352aa)
hypothetical protein n=1 Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI000362AF79
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:CDM65332.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas meth
hypothetical protein
13_1_40cm_3_scaffold_3755_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1191..2009
-----------------
DNA (819bp)
protein (273aa)
hypothetical protein n=1 Tax=BRC1 bacterium SCGC AAA252-M09 RepID=UPI00035C6A41
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ABC transporter
13_1_40cm_3_scaffold_3755_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(2016..3062)
-----------------
DNA (1047bp)
protein (349aa)
von Willebrand factor type A domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHY1_CHLTF
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:CDM65577.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
von Willebrand factor type A domain-containing protein
13_1_40cm_3_scaffold_3755_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3327..4151
-----------------
DNA (825bp)
protein (275aa)
Transglycosylase {ECO:0000313|EMBL:CDM66073.1}; EC=2.4.1.- {ECO:0000313|EMBL:CDM66073.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomona
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase (EC:2.4.2.-)
Monofunctional biosynthetic peptidoglycan transglycosylase id=4918270 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
13_1_40cm_3_scaffold_3755_5
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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4215..4802
-----------------
DNA (588bp)
protein (196aa)
Uncharacterized protein n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EIQ9_GEOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACH38424.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjien
13_1_40cm_3_scaffold_3755_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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comp(4817..5230)
-----------------
DNA (414bp)
protein (138aa)
GtrA-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIX2_KORVE
GtrA family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
GtrA-like protein
13_1_40cm_3_scaffold_3755_7
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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comp(5350..6042)
-----------------
DNA (693bp)
protein (231aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q020U6_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
hypothetical protein
13_1_40cm_3_scaffold_3755_8

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comp(6276..6638)
-----------------
DNA (363bp)
protein (121aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745904
Glyoxalase-like domain protein {ECO:0000313|EMBL:AIA10538.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
13_1_40cm_3_scaffold_3755_9
unknown

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comp(6840..7154)
-----------------
DNA (315bp)
protein (105aa)

This feature has no annotations

13_1_40cm_3_scaffold_3755_10
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7671..8825)
-----------------
DNA (1155bp)
protein (385aa)
Nuclease (SNase-like) n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7H3_NITMU
nuclease
Nuclease (SNase-like) {ECO:0000313|EMBL:ABB75298.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source=
13_1_40cm_3_scaffold_3755_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(8882..9247)
-----------------
DNA (366bp)
protein (122aa)
Putative distant relative of homeotic protein bithoraxoid n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIR2_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:CDM66210.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
GTPase
13_1_40cm_3_scaffold_3755_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(9394..11313)
-----------------
DNA (1920bp)
protein (640aa)
Type II secretory pathway, component HofQ n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIR3_CHLTF rbh
Type IV pilus secretin PilQ/competence protein {ECO:0000313|EMBL:CDM66209.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliph
type II secretory pathway subunit HofQ
13_1_40cm_3_scaffold_3755_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(11531..12157)
-----------------
DNA (627bp)
protein (209aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66208.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_3_scaffold_3755_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12202..12879)
-----------------
DNA (678bp)
protein (226aa)
Tfp pilus assembly protein PilO {ECO:0000313|EMBL:CDM66207.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
pilO; protein PilO; K02664 type IV pilus assembly protein PilO id=16781337 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
pilus assembly protein, PilO
13_1_40cm_3_scaffold_3755_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(12913..13647)
-----------------
DNA (735bp)
protein (245aa)
Tfp pilus assembly protein PilN {ECO:0000313|EMBL:CDM66206.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_3_scaffold_3755_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13644..14705)
-----------------
DNA (1062bp)
protein (354aa)
Type IV pilus assembly protein PilM n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIR7_CHLTF rbh
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:CDM66205.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
type IV pilus assembly protein PilM
13_1_40cm_3_scaffold_3755_17
unknown

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15151..16848
-----------------
DNA (1698bp)
protein (566aa)

This feature has no annotations

13_1_40cm_3_scaffold_3755_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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16851..17465
-----------------
DNA (615bp)
protein (205aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
nucleoside-triphosphatase rdgB (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CP63_DESK7
13_1_40cm_3_scaffold_3755_trna_1
unknown

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17510..17583
-----------------
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_3755_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

17919..18233
-----------------
DNA (315bp)
protein (105aa)
Bacterial nucleoid DNA-binding protein {ECO:0000313|EMBL:CDM65604.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta id=12557233 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
histone-like DNA-binding protein
13_1_40cm_3_scaffold_3755_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

18578..18826
-----------------
DNA (249bp)
protein (83aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM65603.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_3_scaffold_3755_trna_2
unknown

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18953..19025
-----------------
DNA (73bp)
transferRNA
13_1_40cm_3_scaffold_3755_21
RBG_13_OD1_Falkowbacteria_39_14_curated, Falkowbacteria, Parcubacteria, Bacteria

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19048..20307
-----------------
DNA (1260bp)
protein (420aa)
Proteinase inhibitor I4 serpin n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RK57_METP4 rbh
proteinase inhibitor i4 serpin; K13963 serpin B Tax=RBG_13_OD1_Falkowbacteria_39_14_curated
proteinase inhibitor I4 serpin
13_1_40cm_3_scaffold_3755_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(20407..21039)
-----------------
DNA (633bp)
protein (211aa)
Zinc carboxypeptidase {ECO:0000313|EMBL:CDM64032.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein id=24510018 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
peptidase M14 carboxypeptidase A
13_1_40cm_3_scaffold_3755_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(21065..23419)
-----------------
DNA (2355bp)
protein (785aa)
Zinc carboxypeptidase {ECO:0000313|EMBL:CDM64032.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein id=24440298 bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
13_1_40cm_3_scaffold_3755_trna_3
unknown

Not on your lists

23573..23646
-----------------
DNA (74bp)
transferRNA
13_1_40cm_3_scaffold_3755_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

23666..23932
-----------------
DNA (267bp)
protein (89aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66821.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_40cm_3_scaffold_3755_25
Prochlorococcus sp. MIT 0701, Prochlorococcus, Prochlorales, Cyanobacteria, Bacteria

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23998..24699
-----------------
DNA (702bp)
protein (234aa)
hypothetical protein n=1 Tax=Fischerella muscicola RepID=UPI00030535A2
TPR repeat {ECO:0000313|EMBL:KGG28232.1}; TaxID=1499502 species="Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae; Prochlorococcus.;" source="Prochlorococcus sp. MIT 0701.;"
hypothetical protein
13_1_40cm_3_scaffold_3755_26
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(24701..25279)
-----------------
DNA (579bp)
protein (193aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000361535A
von Willebrand factor type A domain {ECO:0000313|EMBL:CDM65574.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Displaying 29 items

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